DN617778

Overview
NameDN617778
Unique NameDN617778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQF 549
            F LVL++NVGG G + +VSIKGSRT W  MSRNWG NWQSN+YL+GQSLSF VT+S+G ++   +VAP  W+FGQT+ T +QF
Sbjct:  178 FELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQQF 260          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.080e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            F  VLITNV G+GD+ AV IKGSRT W PM RNWGQNW  N+ L  Q+LSF VT+S+  +V SYNV+P NW++GQT+ G+QF
Sbjct:  182 FISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.036e-23
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -3
Query:  316 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 549
            F LV +TNVGG+G V  +SIKGS T W  MSRNWG NWQSN+YL GQSLSF+V   +G  V ++NVAP NW FG TY+
Sbjct:  172 FELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATYS 249          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.036e-23
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ ++ L GQ LSF VT   G +VV+Y+VAPP+W F QT+ G+QF
Sbjct:  177 FLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT-GRQF 549
            F LVLITNVGG G + +V IKG++T W  MSRNWG NWQ+N+YLN Q++SF VT++ G ++V  +VAP NW FGQT+T G QF
Sbjct:  167 FELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFTSGVQF 249          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.474e-23
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -3
Query:  316 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 549
            F LV I NVGGAG + +VSIKGS+T W  MSRNWG NWQSN+YL+GQ+LSF +TT++G + V  NV P +WSFGQ Y+
Sbjct:  170 FELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYS 247          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.925e-23
Identity = 49/78 (62.82%), Postives = 57/78 (73.08%), Query Frame = -3
Query:  316 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 549
            F LV + NVGG+G V  VSIKGS+T W  MSRNWGQNWQSN+YLN QSLSF V   +   V  +N+AP NW+FG TYT
Sbjct:  166 FELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNWNFGTTYT 243          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            F  VLI+NVGGAGDV +V IKG+ + W  M RNWGQ W  NS   GQ LSF +T+S+G ++ +YNV P  W FG+TYTG+QF
Sbjct:  174 FLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.556e-22
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = -3
Query:  319 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY 549
            + LVL+TNV G+G V A  +KGS T W  MSRNWG+NWQSN+YL GQ+LSF V   +G  V +Y+VAP NW FG TY
Sbjct:  170 YELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANWQFGSTY 246          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.906e-21
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF VT   G ++ SY+VAPP W FG TY G+QF
Sbjct:  173 FFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254          
The following BLAST results are available for this feature:
BLAST of DN617778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA1_ORYSJ6.330e-2562.65Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP13_ARATH1.080e-2462.20Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXPA3_ORYSJ2.036e-2362.82Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ORYSJ2.036e-2360.98Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ2.660e-2360.24Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH3.474e-2362.82Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP33_ORYSJ5.925e-2362.82Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ2.252e-2257.32Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ8.556e-2259.74Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP20_ARATH1.906e-2158.54Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617778 ID=DN617778; Name=DN617778; organism=Citrus sinensis; type=EST; length=551bp
ATTAATTTACCTTACAAAAGCATTAAGGCAATAACAAAATGCTTTCTACT
ATAGCACTTCTCAAATACATTTTATGTATTGGAACCTGCTTTTAAGCAGA
ATTTCTATCACTTCTCTTTTATCTCCCAGCAGCAGCCACTCAAGTCAAAA
GCATGAAAAAACTGCATGCAAACACTCTCATAAATGGTACTGAAGCACAC
AAGGGCCAATTCAGAAATAATTTTGTACGTACCCATATCGCTAGAGCTAA
TTAAAAATACTTAAAGGGTTGCTTGATTTTAACTTAAATTAAGCCTAATA
TCGAAATTGTCTGCCGGTATAAGTCTGCCCAAATGACCAATTAGGAGGGG
CAACATTGTAAGAAACAACACTGTGGCCATTACTTGTGGTCACAACAAAA
GAGAGGCTTTGTCCATTAAGATACGAGTTGCTTTGCCAGTTTTGGCCCCA
GTTTCTCGACATCGGTTGCCATCTAGTCCTTGAACCTTTGATGGATACAG
CATGCACGTCACCAGCTCCTCCCACGTTTGTTATTAGAACTAAATTGAAG
T
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