DN617778

Overview
NameDN617778
Unique NameDN617778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:486..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.043e-19
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSR-TRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QFR 549
            FNLVL+TNV   G + ++ I GS  T W PM RNWG NW S SYL GQ+LSF VT  +G ++V  N+ P  W FGQT+T + QF+
Sbjct:  178 FNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSKLQFK 262          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQFRY 549
            F LVLITNV G+G V +  IKG+ T W  MSRNWG NWQS + L GQ+LSF VTT+ G  +   +VAP  W FGQT+ T +QF Y
Sbjct:  172 FELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFSTYQQFDY 256          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.972e-18
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSR-TRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QFR 549
            FNLVL+TNV   G + ++ I GS  T W PM RNWG NW S SYL GQ LSF VT  +G ++V  N+ P  W FGQT+  + QF+
Sbjct:  194 FNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 278          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.576e-18
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTR-WQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QFR 549
            F LVL+TNV  AG + ++ + GS T  W PM+RNWG  W S +YL GQ LSF VT ++  ++V  NV PP W FGQT+  + QF+
Sbjct:  183 FQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASKLQFK 267          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.365e-18
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQFRY 549
            F LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G ++V  +  P  WSFGQT+ T  QF Y
Sbjct:  165 FELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFSTYHQFDY 249          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.394e-18
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY-TGRQFRY 549
            F LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G ++V  +  P  WSFGQT+ T  QF Y
Sbjct:  156 FELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFSTYHQFDY 240          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.394e-18
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTR-WQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT--GRQF 549
            FN+V+I+NVGG G V +V+++GS+ + W  M+RNWG NWQS+  L GQ LSF VT ++  +    NV P +W FGQT++  GRQF
Sbjct:  167 FNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = -3
Query:  319 LVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYNVAPPNWSFGQTY 543
            L+ + NVGGAGD+ ++++KGSRT W  MS NWG ++Q+ S L GQSLSF VT+ + G ++ ++NVAP NWS G+TY
Sbjct:  180 LIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTY 255          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  310 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR 549
            F ++L  NVGGAGD+  + +KG +T W  M +NWGQNW +   L GQ +SF VTTS+G +    NV P NW FGQT+ G+
Sbjct:  194 FLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 273          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.495e-18
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  310 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR 549
            F ++L  NVGGAGD+  + +KG +T W  M +NWGQNW +   L GQ +SF VTTS+G +    NV P NW FGQT+ G+
Sbjct:  187 FLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDGK 266          
The following BLAST results are available for this feature:
BLAST of DN617778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP14_ORYSJ3.043e-1952.94Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ8.854e-1956.47Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.972e-1851.76Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ2.576e-1849.41Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ3.365e-1850.59Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ4.394e-1850.59Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.394e-1850.59Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXPA7_ARATH7.495e-1853.95Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP25_ARATH7.495e-1850.00Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH7.495e-1850.00Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617778 ID=DN617778; Name=DN617778; organism=Citrus sinensis; type=EST; length=551bp
ATTAATTTACCTTACAAAAGCATTAAGGCAATAACAAAATGCTTTCTACT
ATAGCACTTCTCAAATACATTTTATGTATTGGAACCTGCTTTTAAGCAGA
ATTTCTATCACTTCTCTTTTATCTCCCAGCAGCAGCCACTCAAGTCAAAA
GCATGAAAAAACTGCATGCAAACACTCTCATAAATGGTACTGAAGCACAC
AAGGGCCAATTCAGAAATAATTTTGTACGTACCCATATCGCTAGAGCTAA
TTAAAAATACTTAAAGGGTTGCTTGATTTTAACTTAAATTAAGCCTAATA
TCGAAATTGTCTGCCGGTATAAGTCTGCCCAAATGACCAATTAGGAGGGG
CAACATTGTAAGAAACAACACTGTGGCCATTACTTGTGGTCACAACAAAA
GAGAGGCTTTGTCCATTAAGATACGAGTTGCTTTGCCAGTTTTGGCCCCA
GTTTCTCGACATCGGTTGCCATCTAGTCCTTGAACCTTTGATGGATACAG
CATGCACGTCACCAGCTCCTCCCACGTTTGTTATTAGAACTAAATTGAAG
T
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