DN617778

Overview
NameDN617778
Unique NameDN617778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = -3
Query:  310 VLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR 540
            +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S  VTTS+G +    +V P +W FGQT+ G+
Sbjct:  183 ILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDGK 259          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.279e-17
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSR-TRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QFR 549
            FNLVL+TNV   G + ++ + GS  T W PM RNWG NW S SYL GQ LSF VT  +G ++V  N+ P  W FGQT+  + QF+
Sbjct:  196 FNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 280          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QFRY 549
            F LVLI+NV G+G + +V +KG  T   P+SRNWG NWQS++ L GQ+L+F VT++ G ++V  N+ P  W FGQ+++   QF Y
Sbjct:  176 FELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFSSNLQFSY 260          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.848e-17
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTR-WQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGR-QFR 549
            F LVL+TNVG AG + A+ +KGS++  W  M+ NWG  W S +YL GQ LSF VT ++G ++V  NV  P W FGQT+    QF+
Sbjct:  178 FQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQFK 262          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 34/82 (41.46%), Postives = 57/82 (69.51%), Query Frame = -3
Query:  307 FNLVLITNVGGAGDVHAVSIKGS-RTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQ 549
            +N+V++ NVGGAGDV  +++KG+ R +W P+ R+WGQ W++ + L G+SL+F V T +     S+ VAP +W++  TY  ++
Sbjct:  207 YNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQAKK 288          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.666e-15
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = -3
Query:  310 LVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYNVAPPNWSFGQTYTGR 543
            LV + NVGG GD+  +++KGSRT W  MS NWG ++Q+ S L GQSLSF +T+ +   ++ +YN AP +WS G+TY  +
Sbjct:  175 LVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQSK 253          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.756e-15
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -3
Query:  310 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSF-GQTYTGR 549
            F ++L  NVGGAG V A+ IKG+RT+W  M +NWGQ W +   L GQ LSF +TTS+G      +V PP+W   GQ++ G+
Sbjct:  229 FLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDGK 309          
The following BLAST results are available for this feature:
BLAST of DN617778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP21_ARATH9.789e-1855.84Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP22_ORYSJ1.279e-1750.59Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.670e-1748.24Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ2.848e-1749.41Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ9.162e-1641.46Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH2.666e-1548.10Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP24_ARATH7.756e-1548.15Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617778 ID=DN617778; Name=DN617778; organism=Citrus sinensis; type=EST; length=551bp
ATTAATTTACCTTACAAAAGCATTAAGGCAATAACAAAATGCTTTCTACT
ATAGCACTTCTCAAATACATTTTATGTATTGGAACCTGCTTTTAAGCAGA
ATTTCTATCACTTCTCTTTTATCTCCCAGCAGCAGCCACTCAAGTCAAAA
GCATGAAAAAACTGCATGCAAACACTCTCATAAATGGTACTGAAGCACAC
AAGGGCCAATTCAGAAATAATTTTGTACGTACCCATATCGCTAGAGCTAA
TTAAAAATACTTAAAGGGTTGCTTGATTTTAACTTAAATTAAGCCTAATA
TCGAAATTGTCTGCCGGTATAAGTCTGCCCAAATGACCAATTAGGAGGGG
CAACATTGTAAGAAACAACACTGTGGCCATTACTTGTGGTCACAACAAAA
GAGAGGCTTTGTCCATTAAGATACGAGTTGCTTTGCCAGTTTTGGCCCCA
GTTTCTCGACATCGGTTGCCATCTAGTCCTTGAACCTTTGATGGATACAG
CATGCACGTCACCAGCTCCTCCCACGTTTGTTATTAGAACTAAATTGAAG
T
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