DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SILST (50S ribosomal protein L3 OS=Silicibacter sp. (strain TM1040) GN=rplC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.029e-37
Identity = 88/216 (40.74%), Postives = 120/216 (55.56%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650
            +IA K G+T  + + G +IPV+VL +D   V   +T +K+G+ ++Q+G G  K K ++K   GHF A  V  KRKL EF V  D L+ +G  +   HF+ GQ VD+              RW F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V K D  R L++++G VPG    +V +KDAV KK     LPFP
Sbjct:    5 IIAKKVGMTRLFMEDGKQIPVTVLSLDGLQVVAQRTEDKDGYTAVQLGAGSAKVKRVSKAMRGHFAASKVEPKRKLVEFRVPADGLIEVGAEISAEHFLEGQKVDVTGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLEVVKTDADRGLVFIKGAVPGPKSGWVTVKDAVKKKAPEG-LPFP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHOP2 (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.028e-36
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F    V  KRK+ EF V+EDAL+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V ++D  R L+ V G VPG+ G ++ ++DAV K
Sbjct:    5 VIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLAHRTTEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWISVRDAVKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHOCS (50S ribosomal protein L3 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.028e-36
Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLPFP 650
            LIA K G+T  +   G  +PV+VL +D   V   +T +++G+ +LQ+G G+ K K++ K +   F    V  K+KL EF VT DAL+ +G  +   HF+PGQ+VD+              RW F G+ A+HG S+SHRS GSTG R  PGK F            + TV+N+ V ++D  R L+ V+G +PG  G +V I+DAV KK PD    PFP
Sbjct:    5 LIAQKLGMTRVFTDEGEHVPVTVLKLDQVQVVAQRTEDRDGYTALQLGAGKAKVKNVAKAQREQFARAKVEPKKKLVEFRVTPDALIEVGAEITADHFVPGQFVDVTGTTIGRGFTGPMRRWNFGGLRATHGVSVSHRSHGSTGGRQDPGKTFKNKKMAGHYGVEKVTVQNLKVVQVDVERGLILVKGAIPGHEGGWVLIRDAVKKKLPDG--APFP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PHEZH (50S ribosomal protein L3 OS=Phenylobacterium zucineum (strain HLK1) GN=rplC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.028e-36
Identity = 84/204 (41.18%), Postives = 115/204 (56.37%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+   +D+ G  +PV+VL ++   V   +T +K+G+ +LQ+G G KK K+ +K   GHF    V  K KL EF V+ED L+ +G  L   HF+PGQ VDI              RW F G+ A+HG S+SHRS GSTGQR  PG+ F              T  N+ V+++D  R L+ V+G VPG  G FV I+DAV
Sbjct:    5 VIAKKLGMARFFDEAGVHVPVTVLSLEGCQVVAHRTKDKDGYVALQLGAGSKKPKNTSKGLRGHFAKGQVEPKAKLVEFKVSEDNLIDVGAELTADHFVPGQKVDITGTTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGQRQDPGRTFPGKKMAGHYGQETVTTLNLTVWRVDAERGLILVKGAVPGTEGTFVKIRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHOP5 (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.343e-36
Identity = 82/206 (39.81%), Postives = 118/206 (57.28%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F A  V  KRK+ EF V+ED+++PIG  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V ++D  R L+ V G VPG+ G ++ ++DAV K
Sbjct:    5 VIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTSEKNGYTALQLGSGSRKTVYMPKAERGQFAAAKVEPKRKVAEFRVSEDSMIPIGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWIAVRDAVKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_CAUSK (50S ribosomal protein L3 OS=Caulobacter sp. (strain K31) GN=rplC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.343e-36
Identity = 82/206 (39.81%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T  +D+ G  +PV+VL +D   V+  +T EK+G+ +LQ+G G KK K+      GHF    V  KR + EF V E AL+ +G      H++ GQ VDI              RW F G+ A+HG S+SHRS GSTGQR  PG+ F              T  NV V+K+D  R L+ V+G VPG+ G++V ++DA+ K
Sbjct:   10 VIAKKLGMTRFFDETGQHVPVTVLSLDGCQVTAQRTVEKDGYTALQLGAGAKKPKNTPNAMRGHFAKNSVEPKRIVAEFRVDEAALIEVGAEFTADHYVAGQKVDIQGITVGKGFAGAMKRWNFSGLRATHGVSVSHRSHGSTGQRQDPGRTFKGKKMAGHLGQETVTTLNVTVWKVDVERGLILVKGAVPGSEGSYVKVRDAIKK 215          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHOPS (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36
Identity = 82/206 (39.81%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F    V  KRK+ EF V+EDAL+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++DAV K
Sbjct:    5 VIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVAHRTTEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVRDAVKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHOPB (50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ ++Q+G G +K  ++ K E G F    V  KRK+ EF V+EDAL+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D AR L+ V G VPG+ G ++ ++DAV K
Sbjct:    5 VIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGHRTTEKNGYVAMQLGSGTRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVARGLILVEGAVPGSKGGWIAVRDAVKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_NITWN (50S ribosomal protein L3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36
Identity = 83/208 (39.90%), Postives = 118/208 (56.73%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F    V  KRK+ EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++DAV KKP
Sbjct:    5 VIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGHRTSEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVRDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRASO (50S ribosomal protein L3 OS=Bradyrhizobium sp. (strain ORS278) GN=rplC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.908e-36
Identity = 83/208 (39.90%), Postives = 118/208 (56.73%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F    V  KRKL EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK +            + T  N+ V + D  R L+ V G VPG+ G ++ ++DAV KKP
Sbjct:    5 VIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGHRTTEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRITTLNLRVVQTDVERGLILVEGAVPGSKGGWISVRDAV-KKP 211          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SILST6.029e-3740.7450S ribosomal protein L3 OS=Silicibacter sp. (stra... [more]
RL3_RHOP21.028e-3639.8150S ribosomal protein L3 OS=Rhodopseudomonas palus... [more]
RL3_RHOCS1.028e-3640.0950S ribosomal protein L3 OS=Rhodospirillum centenu... [more]
RL3_PHEZH1.028e-3641.1850S ribosomal protein L3 OS=Phenylobacterium zucin... [more]
RL3_RHOP51.343e-3639.8150S ribosomal protein L3 OS=Rhodopseudomonas palus... [more]
RL3_CAUSK1.343e-3639.8150S ribosomal protein L3 OS=Caulobacter sp. (strai... [more]
RL3_RHOPS2.992e-3639.8150S ribosomal protein L3 OS=Rhodopseudomonas palus... [more]
RL3_RHOPB2.992e-3639.3250S ribosomal protein L3 OS=Rhodopseudomonas palus... [more]
RL3_NITWN2.992e-3639.9050S ribosomal protein L3 OS=Nitrobacter winogradsk... [more]
RL3_BRASO3.908e-3639.9050S ribosomal protein L3 OS=Bradyrhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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