DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_XANP2 (50S ribosomal protein L3 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 81/207 (39.13%), Postives = 116/207 (56.04%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +IA K G+T  +   G  +PV+VL V+   V   +T +K G+ ++Q+G G++K K++T+ E GHF    V  K KL EF V E+AL+P+G  +   HF+ GQYVD+              R  F G+ A+HG S+SHRS+GSTG R  PGK F              T +N+ V   D  R L+ V G VPG +G ++ ++DAV KK
Sbjct:    5 VIAQKVGMTRIFTDAGEHVPVTVLKVESCQVVAHRTLDKNGYVAVQLGAGRRKPKNVTRAERGHFAVAQVEPKHKLAEFRVPEEALIPVGAEITADHFVVGQYVDVTGTTIGKGFAGGMKRHNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGDVTVTTQNLKVVMTDVERGLIAVEGAVPGHAGGWITVRDAVKKK 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_SPHAL (50S ribosomal protein L3 OS=Sphingopyxis alaskensis GN=rplC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650
            +IA K G+T  +   G  +PV+VL ++   V  V+  E++G+ ++Q+G G  K K++ KP+ G +    V  K KL EF V +DA L +G  L   HF+ GQ VDI              RWGF GM A+HG S+SHR+ GSTG R  PG+VF             RT +N+ + + D  R L++V+G VPG+ G ++ ++DAV K P     P+P
Sbjct:    5 VIAKKMGMTRLFQDDGRHVPVTVLSLEGCQVVSVRDKERDGYVAVQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMVDIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAGHMGARNRTQQNLEIVRTDAERGLLFVKGSVPGSKGGWLLVRDAV-KLPRHPEAPYP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_MARMM (50S ribosomal protein L3 OS=Maricaulis maris (strain MCS10) GN=rplC PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 80/204 (39.22%), Postives = 119/204 (58.33%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            ++A K G+T  + + G+ +P +VL +D+  V   KT +++G+ +LQ+G G+ K K   K   GHF    V  KRKL EF V EDAL+ +G+ L   HF+PGQ VD+              R GF G+ A+HG S+SHRS GSTGQ   PGKVF            + T +N+ V ++D  R ++ V+G VPG++G +V ++DA+
Sbjct:   10 VVARKLGMTRIFAEDGSHVPCTVLHMDNVQVVSHKTADRDGYVALQLGAGEAKAKRTPKAMRGHFAKAKVAPKRKLVEFRVAEDALIEVGSELTADHFVPGQKVDVAGISIGKGFAGAMKRHGFGGLRATHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAVRVTTQNIEVVRVDVERGIVLVKGAVPGSAGGWVELRDAI 213          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_NITHX (50S ribosomal protein L3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.485e-35
Identity = 82/208 (39.42%), Postives = 117/208 (56.25%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  +   G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  ++ K E G F    V  KRK+ EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++DAV KKP
Sbjct:    5 VIAQKVGMTRVFTDAGEHIPVTVLRLSNCQVLGHRTSEKNGYVALQLGSGARKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVRDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRASB (50S ribosomal protein L3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.485e-35
Identity = 82/208 (39.42%), Postives = 118/208 (56.73%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F    V  KRK+ EF V+ED+L+P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK +            + T  N+ V + D  R L+ V G VPG+ G ++ ++DAV KKP
Sbjct:    5 VIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGHRTTEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEILADHFVVGQFVDVTGTTVGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGSKGGWISVRDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRAJA (50S ribosomal protein L3 OS=Bradyrhizobium japonicum GN=rplC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.939e-35
Identity = 81/208 (38.94%), Postives = 118/208 (56.73%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  + + G  IPV+VL + +  V   +T EK G+ +LQ+G G +K  +M K E G F    V  KR++ EF VT DA++P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK +            + T  N+ V ++D  R L+ V G VPG+ G ++ ++DAV KKP
Sbjct:    5 VIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGHRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTWKNKKMPGHMGVDRITTLNLRVVQLDVERGLILVEGAVPGSKGGWIRVRDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PARDP (50S ribosomal protein L3 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.533e-35
Identity = 88/216 (40.74%), Postives = 119/216 (55.09%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650
            +IA K G+T  + + G ++PV+VL VD+  V   +T E++G+ +LQ+G G+ K K  T    GHF    V  KRK+ EF V+ + L+ +G  +   H+  GQYVDI              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V K D  R L+ V+G VPG+ G +V IKDAV KKP      FP
Sbjct:    6 VIAKKLGMTRLFLEDGRQVPVTVLHVDNVQVIAQRTAEQDGYVALQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIKDAV-KKPLAESTVFP 220          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_OLICO (50S ribosomal protein L3 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.308e-35
Identity = 81/208 (38.94%), Postives = 117/208 (56.25%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+   + + G  IPV+VL + +  V   +T +K G+ +LQ+G G +K  +M K E G F    V  KRK+ EF V+EDA++P+G  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS+GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG+ G ++ ++DAV KKP
Sbjct:    5 VIAQKVGMMRVFTEAGEHIPVTVLKLGNCQVVGHRTKDKNGYTALQLGAGARKSVYMPKAERGQFAVAKVEPKRKVAEFRVSEDAIIPVGAEIQADHFVVGQFVDVTGTSIGKGYAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPGHMGVDRITTLNLRVVQTDVERGLLLVEGAVPGSKGGWITVRDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICAH (50S ribosomal protein L3 OS=Rickettsia akari (strain Hartford) GN=rplC PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RIP++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E   + I  +L V HF+ GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ +RG +PG   +++ IKDAV K
Sbjct:    5 IIAQKIGMTSVFNDKGERIPLTLVKVDDCQVVGHKTLEKHGYNALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDRERKLIMIRGSIPGHKNSYLSIKDAVKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_AZOC5 (50S ribosomal protein L3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplC PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 81/207 (39.13%), Postives = 113/207 (54.59%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 623
            +IA K G+T  +   G  +PV+VL V+   V   +T +K G+ ++Q+G G++K K+  K E G F    V  KRKL EF V  DAL+P+G  +   HF+ GQYVD+              R  F G+ ASHG S+SHRS+GSTG R  PGK F              T +N+ V   D  R L+ V G VPG +G ++ ++DAV K+
Sbjct:    5 VIAQKLGMTRIFTDAGEHLPVTVLKVESCQVVAHRTLDKNGYVAVQLGAGKRKPKNTNKAERGQFARAEVEPKRKLAEFRVDADALIPVGAEITADHFVVGQYVDVTGTTIGKGFAGGMKRHNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPGHMGDVTVTTQNLKVVMTDVERGLIAVEGAVPGHAGGWIMVRDAVKKR 211          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_XANP25.104e-3639.1350S ribosomal protein L3 OS=Xanthobacter autotroph... [more]
RL3_SPHAL5.104e-3637.9650S ribosomal protein L3 OS=Sphingopyxis alaskensi... [more]
RL3_MARMM8.706e-3639.2250S ribosomal protein L3 OS=Maricaulis maris (stra... [more]
RL3_NITHX1.485e-3539.4250S ribosomal protein L3 OS=Nitrobacter hamburgens... [more]
RL3_BRASB1.485e-3539.4250S ribosomal protein L3 OS=Bradyrhizobium sp. (st... [more]
RL3_BRAJA1.939e-3538.9450S ribosomal protein L3 OS=Bradyrhizobium japonic... [more]
RL3_PARDP2.533e-3540.7450S ribosomal protein L3 OS=Paracoccus denitrifica... [more]
RL3_OLICO3.308e-3538.9450S ribosomal protein L3 OS=Oligotropha carboxidov... [more]
RL3_RICAH5.643e-3539.3250S ribosomal protein L3 OS=Rickettsia akari (stra... [more]
RL3_AZOC55.643e-3539.1350S ribosomal protein L3 OS=Azorhizobium caulinoda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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