DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICBR (50S ribosomal protein L3 OS=Rickettsia bellii (strain RML369-C) GN=rplC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.370e-35
Identity = 79/206 (38.35%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G R+P++++ VDD  V   K  EK G+ +L +G   KK   +TKP    F    V  K KL+EF ++ED  + I  SL V HF  GQ++D+              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ ID  + L+ ++G +PG  G+++ IKDA+ K
Sbjct:    5 IIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYNALVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFIDVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCSQVTIQNLKIFAIDKEQGLIMIQGSIPGHKGSYISIKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICB8 (50S ribosomal protein L3 OS=Rickettsia bellii (strain OSU 85-389) GN=rplC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.370e-35
Identity = 79/206 (38.35%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G R+P++++ VDD  V   K  EK G+ +L +G   KK   +TKP    F    V  K KL+EF ++ED  + I  SL V HF  GQ++D+              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ ID  + L+ ++G +PG  G+++ IKDA+ K
Sbjct:    5 IIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYNALVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFIDVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCSQVTIQNLKIFAIDKEQGLIMIQGSIPGHKGSYISIKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHOS4 (50S ribosomal protein L3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplC PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 84/208 (40.38%), Postives = 117/208 (56.25%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKP 626
            +IA K G+T  + + G ++PV+VL +D   V   +T EK+G+ ++Q+G G  K K ++  + GHF    V  KRK+ EF VT D L+ +G  +   H+  GQ+VDI              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  R L+ V+G VPG+ G +V IKDAV KKP
Sbjct:    5 VIAKKLGMTRLFLEDGKQVPVTVLQLDSLQVVAQRTTEKDGYTAVQLGAGAAKAKRVSAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDSDRGLIMVKGAVPGSKGGWVTIKDAV-KKP 211          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_DINSH (50S ribosomal protein L3 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplC PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 85/215 (39.53%), Postives = 119/215 (55.35%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLP 644
            +IA K G+T  + + G ++PV+VL +D   V   +T EK+G+ ++Q+G G  K K  TK   GHF A  V  KRK+ EF V  + L+ +G  +   H+  GQYVD+              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  R L+ ++G VPG+ G +V IKDAV K  P+  +LP
Sbjct:    5 VIAKKVGMTRLFMEDGKQVPVTVLQLDKLQVVAQRTAEKDGYSAVQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYFEGQYVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDADRGLIMIKGAVPGSKGGWVTIKDAVKKPVPENVILP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICM5 (50S ribosomal protein L3 OS=Rickettsia massiliae (strain Mtu5) GN=rplC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 79/206 (38.35%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I TSL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFRGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHIEC (50S ribosomal protein L3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 82/204 (40.20%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +D   V   +T EK G+ ++Q+G GQ K K+ +K   G+F    V  K KL EF V+ED LL IGT L   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++DAV
Sbjct:    5 VIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVVATRTVEKNGYTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKADHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHIE6 (50S ribosomal protein L3 OS=Rhizobium etli (strain CIAT 652) GN=rplC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 82/204 (40.20%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +D   V   +T EK G+ ++Q+G GQ K K+ +K   G+F    V  K KL EF V+ED LL IGT L   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++DAV
Sbjct:    5 VIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVVATRTVEKNGYTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PROMH (50S ribosomal protein L3 OS=Proteus mirabilis (strain HI4320) GN=rplC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 79/204 (38.73%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ +++N V+QVK  EK+G+ ++QV  G KK   + KPE GHF   GV   R LREF + E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PG+VF            Q TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIENNRVTQVKDLEKDGYRAIQVTTGSKKANRVLKPEAGHFAKAGVEAGRLLREFRLNEGEEYTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGRVFKGKKMAGQLGNEQVTVQSLEVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICCK (50S ribosomal protein L3 OS=Rickettsia canadensis (strain McKiel) GN=rplC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.777e-34
Identity = 78/206 (37.86%), Postives = 117/206 (56.80%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + +  SL V HF+ GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ IKDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERIALTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDVAASLEVDHFMAGQFVDITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKDRKLIMIQGSIPGHKNSYLSIKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHILW (50S ribosomal protein L3 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.777e-34
Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +D   V   +T EK G+ ++Q+G GQ K K+ +K   G+F    V  K K+ EF V+ED LL IGT +   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++DAV
Sbjct:    5 VIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVVATRTVEKNGYTAVQLGAGQAKVKNTSKAMRGNFAVANVEPKAKVAEFRVSEDQLLEIGTEIKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVRDAV 208          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RICBR7.370e-3538.3550S ribosomal protein L3 OS=Rickettsia bellii (str... [more]
RL3_RICB87.370e-3538.3550S ribosomal protein L3 OS=Rickettsia bellii (str... [more]
RL3_RHOS49.626e-3540.3850S ribosomal protein L3 OS=Rhodobacter sphaeroide... [more]
RL3_DINSH9.626e-3539.5350S ribosomal protein L3 OS=Dinoroseobacter shibae... [more]
RL3_RICM51.642e-3438.3550S ribosomal protein L3 OS=Rickettsia massiliae (... [more]
RL3_RHIEC1.642e-3440.2050S ribosomal protein L3 OS=Rhizobium etli (strain... [more]
RL3_RHIE61.642e-3440.2050S ribosomal protein L3 OS=Rhizobium etli (strain... [more]
RL3_PROMH3.658e-3438.7350S ribosomal protein L3 OS=Proteus mirabilis (str... [more]
RL3_RICCK4.777e-3437.8650S ribosomal protein L3 OS=Rickettsia canadensis ... [more]
RL3_RHILW4.777e-3439.2250S ribosomal protein L3 OS=Rhizobium leguminosaru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
back to top