DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICAE (50S ribosomal protein L3 OS=Rickettsia africae (strain ESF-5) GN=rplC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.239e-34
Identity = 79/206 (38.35%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L VG   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVVGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICRS (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICRO (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Iowa) GN=rplC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICPU (50S ribosomal protein L3 OS=Rickettsia peacockii (strain Rustic) GN=rplC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_METSB (50S ribosomal protein L3 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplC PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.149e-34
Identity = 79/204 (38.73%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +D   V   +T E+ G+ +LQ+G G+ K K+++K E G F    V  K KL EF V E  LLP+G  +   HF+ GQ+VD+              RW F G+ A+HG SLSHRS GSTG R  PGK F            + T  N+ V ++D  R L+ V G VPG +G ++ ++DA+
Sbjct:    5 VIAQKLGMTRVFNDGGEHVPVTVLKLDGCQVVAHRTKERNGYTALQLGIGRAKVKNVSKAERGRFAIAEVEPKLKLAEFRVEESDLLPVGAEITADHFVVGQFVDVTGTSIGKGFAGPMKRWNFGGLRATHGVSLSHRSHGSTGGRQDPGKTFKNKKMAGHMGAERVTTLNLKVVQLDIERGLILVEGAVPGVAGGWIQVRDAI 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHIL3 (50S ribosomal protein L3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.064e-33
Identity = 79/204 (38.73%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL ++   V   +T EK G+ ++Q+G GQ K K+ +K   G+F    V  K KL EF V+ED LL +GT +   HF  GQ VD+              R GF G+ A+HG S+SHRS GSTG R  PGKVF            + T +N+ V   D  R L+ ++G VPG+ G ++ ++DAV
Sbjct:    5 VIAQKVGMTRVYNDAGEHVPVTVLRMEGCQVVATRTVEKNGYTAVQLGAGQAKVKNTSKAMRGNFAIANVEPKAKLTEFRVSEDQLLEVGTEIKAGHFAAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSRQDPGKVFKNKKMAGHMGQTRVTTQNLEVVSTDEDRGLILIKGAVPGSKGAWIIVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BEII9 (50S ribosomal protein L3 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.064e-33
Identity = 80/206 (38.83%), Postives = 113/206 (54.85%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T  +   G  IPV+VL +D   V   +T E+ G+ ++Q+G G+ K K+++K E G F    V  K KL EF V +  LLPIG  +   HF+ GQ+VD+              RW F G+ A+HG S+SHRS GSTG R  PGK F            + T  N+ V + D  R L+ V G VPG +G +++++DAV K
Sbjct:    5 VIAQKLGMTRVFTDAGEHIPVTVLKLDGCQVVGHRTKEQNGYVAVQLGIGRAKVKNVSKAERGRFAVAKVEPKLKLAEFRVDDATLLPIGAEITADHFVVGQFVDVTGTSTGKGFAGAMKRWNFGGLRATHGVSISHRSHGSTGGRQDPGKTFKNKKMAGHLGTERVTTLNLRVVQTDVERGLILVEGAVPGTAGGWIYVRDAVKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PHOLL (50S ribosomal protein L3 OS=Photorhabdus luminescens subsp. laumondii GN=rplC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.390e-33
Identity = 78/204 (38.24%), Postives = 112/204 (54.90%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++DN V+QVK  + +G+ ++QV  G KK   + KPE GHF   GV   R LREF ++E     +G S+ V  F   + VD+              RW F+   ASHG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPG++G  + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEDNRVTQVKELDNDGYRAIQVTTGSKKASRVNKPEAGHFAKAGVEAGRILREFRLSEGEEYAVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDASHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGSTGGNLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ERWCT (50S ribosomal protein L3 OS=Erwinia carotovora subsp. atroseptica GN=rplC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.815e-33
Identity = 78/204 (38.24%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R LREF ++E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR+ GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLANDGYRAVQVTAGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADIKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRAPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ROSDO (50S ribosomal protein L3 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.371e-33
Identity = 83/215 (38.60%), Postives = 119/215 (55.35%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLP 644
            +IA K G+T  + + G +IPV+VL +D   V   +T EK+G+ ++Q+G G  K K  ++   GHF A  V  KRK+ EF V  + L+ +G  +   H+  GQ+VD+              R  F G+ ASHG S+SHRS GSTGQ   PGKVF            + T +N+ V + D  R L+ V+G VPG+ G +V +KDAV K  P+  +LP
Sbjct:    6 VIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVVAQRTSEKDGYSAVQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPENLIGVGEEITANHYFEGQFVDVAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHMGAARVTTQNLQVVRTDANRGLIMVKGAVPGSKGGWVTVKDAVKKPFPENAILP 220          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RICAE6.239e-3438.3550S ribosomal protein L3 OS=Rickettsia africae (st... [more]
RL3_RICRS8.149e-3437.8650S ribosomal protein L3 OS=Rickettsia rickettsii ... [more]
RL3_RICRO8.149e-3437.8650S ribosomal protein L3 OS=Rickettsia rickettsii ... [more]
RL3_RICPU8.149e-3437.8650S ribosomal protein L3 OS=Rickettsia peacockii (... [more]
RL3_METSB8.149e-3438.7350S ribosomal protein L3 OS=Methylocella silvestri... [more]
RL3_RHIL31.064e-3338.7350S ribosomal protein L3 OS=Rhizobium leguminosaru... [more]
RL3_BEII91.064e-3338.8350S ribosomal protein L3 OS=Beijerinckia indica su... [more]
RL3_PHOLL1.390e-3338.2450S ribosomal protein L3 OS=Photorhabdus luminesce... [more]
RL3_ERWCT1.815e-3338.2450S ribosomal protein L3 OS=Erwinia carotovora sub... [more]
RL3_ROSDO2.371e-3338.6050S ribosomal protein L3 OS=Roseobacter denitrific... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
back to top