DN617775

Overview
NameDN617775
Unique NameDN617775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11506 contig Csv1_Contig11506:259..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICCN (50S ribosomal protein L3 OS=Rickettsia conorii GN=rplC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.371e-33
Identity = 77/206 (37.38%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V HF  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            + T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_WIGBR (50S ribosomal protein L3 OS=Wigglesworthia glossinidia brevipalpis GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 80/204 (39.22%), Postives = 110/204 (53.92%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            LI  K G+T T++  G+ IPV+V+ + DN + Q+K  EK+G+ S+QV  G KK     K  +GHF+   V L R L EF V +++   +G  L +  FI    V+I              RW F G  ASHG SLSHR+ GS GQ   PGKVF            + TVKN++V KID    L+ ++G VPG+ G+ + IK  V
Sbjct:    4 LIGRKIGMTRTFNSDGSSIPVTVIKISDNKIVQIKKIEKDGYSSIQVTTGVKKFSRENKSIIGHFKKNKVELGRGLWEFKVDKNSKFYVGQVLSINTFININKVNITGISKGKGFSGTMKRWNFHGQDASHGNSLSHRAPGSIGQNQTPGKVFKGKKMSGHLGYNKNTVKNLFVVKIDLEHELLLIKGSVPGSKGSDLIIKPVV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RICFE (50S ribosomal protein L3 OS=Rickettsia felis GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 77/206 (37.38%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYK 620
            +IA K G+T+ ++  G RI ++++ VDD  V   KT EK G+ +L +G   KK   +TKP    F    +  K KL+EF ++E+  + I  SL V +F  GQ+VDI              R  F+G+ ASHG S+SHRS GSTGQR  PGKVF            Q T++N+ ++ +D  R L+ ++G +PG   +++ +KDA+ K
Sbjct:    5 IIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAASLEVDYFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAIKK 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_MESSB (50S ribosomal protein L3 OS=Mesorhizobium sp. (strain BNC1) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 83/216 (38.43%), Postives = 119/216 (55.09%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVXLLPFP 650
            +IA K G+T  +++ G  IPV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF A  V  K K+ EF V+ + LL +G  +   HF+PGQ VD+              R  F G  A+HG S+SHR+ GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G+++ ++DAV K P     P P
Sbjct:    5 VIAQKIGMTRVYNETGEHIPVTVLRMENCQVVAQRTEEKNGYTAVQLGVGLAKVKNTSKALRGHFAAASVEPKAKVAEFRVSPENLLDVGAEITADHFVPGQKVDVTGTSIGKGFQGVMKRHNFGGGRATHGNSVSHRTHGSTGQRQDPGKVFKGKKMAGHMGDRRVTTQNLEVVSTDTERGLILVRGAVPGSKGSWIMVRDAV-KAPLPKEAPLP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIBS (50S ribosomal protein L3 OS=Acinetobacter baumannii (strain SDF) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 73/206 (35.44%), Postives = 116/206 (56.31%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    +G ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  +D  R+++ V+G +PGA+G  V ++ A+
Sbjct:    5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPAI 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_RHORT (50S ribosomal protein L3 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.044e-33
Identity = 86/215 (40.00%), Postives = 118/215 (54.88%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVXLLP 644
            LIA K G+T  +   G  +PV+VL V+   V  V+T E +G+ ++Q+G G  K K  +K   GHF A  V  K+K+ EF V+ED LL  G  L   HF+ GQ VDI              R  F+G+ A+HG S+SHRS GSTGQ   PG+VF            + T +++ V   D  R L+ V+G VPGA G ++ ++DAV KK P+   LP
Sbjct:    5 LIAQKVGMTRLFTDEGTHVPVTVLKVEACQVVAVRTSETDGYTAVQLGAGVAKVKRTSKAMRGHFAAAKVEPKKKVVEFRVSEDCLLEPGAELSAAHFVAGQKVDIAGTTIGKGFAGAMKRHNFRGLEATHGVSVSHRSHGSTGQCQDPGRVFKGKKMAGHMGDTRITQQSLTVVATDADRGLILVKGSVPGADGAWLEVRDAVKKKLPEGVPLP 219          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_PECCP (50S ribosomal protein L3 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.044e-33
Identity = 78/204 (38.24%), Postives = 112/204 (54.90%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  K G+T  + + G  IPV+V+ ++ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R LREF ++E     +G S+ V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVF            + TV+++ V ++D  RNL+ V+G VPGA+G+ + +K AV
Sbjct:    4 LVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRTLREFRLSEGEEFTVGQSISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAV 207          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_ACIAD (50S ribosomal protein L3 OS=Acinetobacter sp. (strain ADP1) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.282e-33
Identity = 74/206 (35.92%), Postives = 115/206 (55.83%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            L+  KCG+T  +   G  +PV+V+ VD N ++Q+KT E +G+ ++QV  G++++  +T  + GHF   GV   R ++EF VTE  L    IG ++GV  F  GQ VD+              RW F+   A+HG S+SHR LGSTGQ   PG+VF            + TV+ + +  ID  R+++ V+G +PGA+G  V ++  +
Sbjct:    5 LVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREIGGTIGVDLFTVGQVVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSIDAERSVLVVKGAIPGATGGDVIVRPTI 210          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUSI (50S ribosomal protein L3 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
BLAST of DN617775 vs. ExPASy Swiss-Prot
Match: RL3_BRUO2 (50S ribosomal protein L3 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 79/204 (38.73%), Postives = 111/204 (54.41%), Query Frame = 3
Query:    3 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFXXXXXXXXXXXXQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 614
            +IA K G+T  ++  G  +PV+VL +++  V   +T EK G+ ++Q+G G  K K+ +K   GHF    V  K KL EF V+ D LL +G  +   HF+ GQ VD+              R  F G  ASHG S++HRS GSTGQR  PGKVF            + T +N+ V   D  R L+ VRG VPG+ G ++ ++DAV
Sbjct:    5 VIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEKNGYTAVQLGVGMAKVKNTSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKGKKMAGHMGQTRVTTQNIEVVSTDSDRGLILVRGAVPGSKGAWILVRDAV 208          
The following BLAST results are available for this feature:
BLAST of DN617775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RICCN2.371e-3337.3850S ribosomal protein L3 OS=Rickettsia conorii GN=... [more]
RL3_WIGBR3.096e-3339.2250S ribosomal protein L3 OS=Wigglesworthia glossin... [more]
RL3_RICFE3.096e-3337.3850S ribosomal protein L3 OS=Rickettsia felis GN=rp... [more]
RL3_MESSB3.096e-3338.4350S ribosomal protein L3 OS=Mesorhizobium sp. (str... [more]
RL3_ACIBS3.096e-3335.4450S ribosomal protein L3 OS=Acinetobacter baumanni... [more]
RL3_RHORT4.044e-3340.0050S ribosomal protein L3 OS=Rhodospirillum rubrum ... [more]
RL3_PECCP4.044e-3338.2450S ribosomal protein L3 OS=Pectobacterium carotov... [more]
RL3_ACIAD5.282e-3335.9250S ribosomal protein L3 OS=Acinetobacter sp. (str... [more]
RL3_BRUSI9.009e-3338.7350S ribosomal protein L3 OS=Brucella suis (strain ... [more]
RL3_BRUO29.009e-3338.7350S ribosomal protein L3 OS=Brucella ovis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617775 ID=DN617775; Name=DN617775; organism=Citrus sinensis; type=EST; length=655bp
GGCTTATTGCCGTCAAGTGTGGAATAACCGCCACCTGGGATAAATGGGGC
GCCAGGATTCCCGTCTCTGTGCTTTTTGTCGATGATAATATCGTCTCTCA
AGTTAAAACCTTTGAGAAAGAAGGTTTCTTTTCCTTGCAGGTTGGATGCG
GGCAGAAGAAGGATAAACATATGACAAAACCTGAAGTGGGTCATTTTAGA
GCTCAAGGTGTTCCACTGAAGAGGAAATTGCGGGAGTTTCCTGTCACAGA
AGATGCACTTCTCCCCATTGGCACATCACTTGGAGTTCGTCATTTTATTC
CTGGCCAATACGTTGATATCACGGGTACCACGAAAGGGAAAGGTTTTCAG
GGTGGAATGAAAAGATGGGGATTTAAAGGAATGCCAGCTTCTCATGGTGC
ATCATTGTCGCATCGAAGTCTTGGTTCTACCGGTCAGAGGGATGCTCCTG
GCAAGGTATTTAAGGGCAAAAAAATGCCTGGGCGAATGGGTGGAAAGCAG
AGAACCGTAAAAAATGTATGGGTATACAAAATAGATCCAGCAAGGAATTT
GATGTGGGTGAGAGGCCAGGTGCCAGGTGCTTCAGGAAACTTTGTATTTA
TAAAGGATGCTGTTTACAAGAAACCTGATGTTNAACTGCTCCCATTCCCC
ACATA
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