DN617771

Overview
NameDN617771
Unique NameDN617771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 7.816e-75
Identity = 136/212 (64.15%), Postives = 162/212 (76.42%), Query Frame = 3
Query:  159 REQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            ++ +  EP+L +  +RF + PI+Y  +W+MYKKAEASFWTAEEVDLS+D+ HWE L   EKHFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKD +E+  LFNAIE +PCV  KA WA+ WI+                SSS+AER+V FA VEGIFFSGSF +IFWL KRG+MPGLTFSNEL
Sbjct:   56 KKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWIND--------------DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNEL 253          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_DICDI (Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.879e-74
Identity = 138/207 (66.67%), Postives = 158/207 (76.33%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL E   RF +FPI+Y  +W MYKKA AS W AEE+DL  D   WE +L D+E+HFISHVLAFFAASDGIV ENLA RF++++QIPEAR FYGFQIA+ENIHSE YSLL+ETYIKD + K +LFNAIE IPC+ +KA+WAL WI+                S SFAERLV FA VEGIFFSGSFC+IFWL KRGLM GLTFSNEL
Sbjct:   12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYKLTDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWIN---------------DSDSFAERLVAFAAVEGIFFSGSFCSIFWLKKRGLMQGLTFSNEL 203          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_TRYBB (Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.925e-73
Identity = 130/217 (59.91%), Postives = 162/217 (74.65%), Query Frame = 3
Query:  144 NEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            ++ +++E E +EP+L E   R+ +FPI+Y  +W+ YK+AE+S WT EE+DL  D+  WE+L D E+HFI HVLAFFAASDGIVLENLA RF+ ++Q+PE R FYGFQIAMENIHSE YS+L++TY+ D  EK RL +AI  IPC+ +KAKWA++WI                S +SF  RLV FA VEGIFFSGSFCAIFWL KRGLMPGLTFSNEL
Sbjct:    6 HKCSRKEGEVEEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEKLDDGERHFIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPDEKQRLLHAIRTIPCIEKKAKWAIEWIG---------------SQTSFPTRLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEL 207          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_DROME (Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila melanogaster GN=RnrS PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.514e-73
Identity = 133/206 (64.56%), Postives = 157/206 (76.21%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EP+L E  +RF +FPI+Y  +W+MYKKAEASFWT EEVDLS+D+  W RL D E+HFISHVLAFFAASDGIV ENL  RF  ++QI EAR FYGFQIAMEN+HSEMYS+L++TYI+D  ++  LFNAIE +P V RKA WAL WI S               S++F ER++ FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:   74 EPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS--------------KSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 265          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_NEUCR (Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa GN=rnr-2 PE=3 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 3.284e-73
Identity = 135/213 (63.38%), Postives = 161/213 (75.59%), Query Frame = 3
Query:  159 REQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            + +E  EP+L E  QRF +FPI+Y ++W+MYKKAEASFWTAEE+DLS+D+  W  RL D EK FISH+LAFFAASDGIV ENL  RF  ++QIPEAR FYGFQI MENIHSE YSLL++TYIK+  ++  LFNAI+ IPC+ +KA WAL WI                 SS+FA+RLV FA VEGIFFSG+F +IFWL KRGLMPGLTFSNEL
Sbjct:   71 KPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITD--------------KSSTFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNEL 269          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_VACCA (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Ankara) GN=MVA032L PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.316e-73
Identity = 132/206 (64.08%), Postives = 154/206 (74.76%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL     RF +FPI+Y  +W MYKKAEASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY+KDS EK+ LFNAIE +PCV +KA WA  WIH                S+ + ERL+ FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH---------------DSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 192          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_VARV (Ribonucleoside-diphosphate reductase small chain OS=Variola virus GN=F4L PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.555e-73
Identity = 132/206 (64.08%), Postives = 155/206 (75.24%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL +   RF +FPI+Y  +W MYKKAEASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY+KDS EK+ LFNAIE +PCV +KA WA  WIH                S+ + ERL+ FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:    2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH---------------DSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 192          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_VACCW (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Western Reserve) GN=VACWR043 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.555e-73
Identity = 132/206 (64.08%), Postives = 154/206 (74.76%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL     RF +FPI+Y  +W MYKKAEASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY+KDS EK+ LFNAIE +PCV +KA WA  WIH                S+ + ERL+ FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:    2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH---------------DSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 192          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_VACCC (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Copenhagen) GN=F4L PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.555e-73
Identity = 132/206 (64.08%), Postives = 154/206 (74.76%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL     RF +FPI+Y  +W MYKKAEASFWT EEVD+S+D+  W +L   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGFQ+A+ENIHSEMYSLL++TY+KDS EK+ LFNAIE +PCV +KA WA  WIH                S+ + ERL+ FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:    2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH---------------DSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 192          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2B_MACFA (Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca fascicularis GN=RRM2B PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.630e-72
Identity = 132/224 (58.93%), Postives = 167/224 (74.55%), Query Frame = 3
Query:  126 LKNETGNEVNQRE-QEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            L   + ++ N  E + ++EP+L + ++RF +FPI+Y  +W+MYK+A+ASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL++TYI+D K++  LFNAIE +P V +KA WAL WI                  S+F ER+V FA VEGIFFSGSF AIFWL KRGLMPGLTFSNEL
Sbjct:   14 LDERSSSDTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD--------------RKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNEL 223          
The following BLAST results are available for this feature:
BLAST of DN617771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RIR2_SPISO7.816e-7564.15Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DICDI3.879e-7466.67Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_TRYBB1.925e-7359.91Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_DROME2.514e-7364.56Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_NEUCR3.284e-7363.38Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCA7.316e-7364.08Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VARV9.555e-7364.08Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCW9.555e-7364.08Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCC9.555e-7364.08Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2B_MACFA1.630e-7258.93Ribonucleoside-diphosphate reductase subunit M2 B ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617771 ID=DN617771; Name=DN617771; organism=Citrus sinensis; type=EST; length=795bp
CAACAATTGAAAATCTGTCCACTTGCTCTCTTTAACAACAAGAGGTTTTT
GCAGGGTTTTATTACTTTTCTTTCTCTTCTCGCCACAAATAACGAAAACA
GAACTTGTGAGAAAAAATGGGTTCCTTGAAAAATGAAACAGGGAATGAAG
TAAACCAACGTGAACAGGAAGACCAAGAGCCAATATTAATGGAACAAAAC
CAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAACTTTGGGAGATGTA
CAAGAAGGCTGAAGCCAGTTTTTGGACCGCCGAGGAGGTTGATCTTTCCC
AGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACACTTTATA
AGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTTTGGAAAA
TTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCTCGAGCGT
TTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGATGTACAGC
TTGCTTCTGGAGACATACATCAAAGACTCAAAAGAGAAGCATAGATTGTT
TAATGCAATTGAAAACATTCCCTGTGTGGCTCGTAAGGCTAAATGGGCTC
TGGATTGGATTCATAGTTGATGCAAAGGGAGGTCTGTCATCTCATTGTGC
CCCATGTGCAGTTCCAGCTCATTTGCAGAGAGACTTGTAGGTTTTGCTTG
TGTTGAAGGAATCTTCTTTTCAGGAAGCTTTTGTGCCATATTCTGGCTTN
AAAAGAGGGGACTGATGCCAGGTTTGACGTTCTCAAACGAGCTTA
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