DN617771

Overview
NameDN617771
Unique NameDN617771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2B_PONAB (Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii GN=RRM2B PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.780e-72
Identity = 130/220 (59.09%), Postives = 167/220 (75.91%), Query Frame = 3
Query:  138 TGNEVNQRE-QEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            + ++ N+ E + ++EP+L + ++RF +FPI+Y  +W+MYK+A+ASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL++TYI+D K++  LFNAIE +P V +KA WAL WI                  S+F ER+V FA VEG+FFSGSF AIFWL KRGLMPGLTFSNEL
Sbjct:   18 SSSDTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD--------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNEL 223          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2B_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus GN=Rrm2b PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.780e-72
Identity = 135/228 (59.21%), Postives = 167/228 (73.25%), Query Frame = 3
Query:  111 EKMGSLKNETGNEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EK   L +ET   V    + ++EP+L + ++RF +FPI+Y  +W MYK+A+ASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL++TYI+D K++  LFNAIE +P V +KA WAL WI                  S+F ER+V FA VEGIFFSGSF AIFWL KRGLMPGLTFSNEL
Sbjct:   13 EKGEQLCSETEENV---VRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHWNKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD--------------RKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNEL 223          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2B_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens GN=RRM2B PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.631e-72
Identity = 130/220 (59.09%), Postives = 167/220 (75.91%), Query Frame = 3
Query:  138 TGNEVNQRE-QEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            + ++ N+ E + ++EP+L + ++RF +FPI+Y  +W+MYK+A+ASFWTAEEVDLS+D+ HW +L   EK+FISH+LAFFAASDGIV ENL  RF  ++Q+PEAR FYGFQI +EN+HSEMYSLL++TYI+D K++  LFNAIE +P V +KA WAL WI                  S+F ER+V FA VEG+FFSGSF AIFWL KRGLMPGLTFSNEL
Sbjct:   18 SSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD--------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNEL 223          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_VACCP (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain L-IVP) GN=F14 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.742e-72
Identity = 130/206 (63.11%), Postives = 154/206 (74.76%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL     RF +FPI+Y  +W MYKKAEASFWT EEVD+S+D+  W ++   EK+FI HVLAFFAASDGIV ENLA RF  ++QI EAR FYGF++A+ENIHSEMYSLL++TY+KDS EK+ LFNAIE +PCV +KA WA  WIH                S+ + ERL+ FA VEGIFFSGSF +IFWL KRGLMPGLTFSNEL
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKVTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH---------------DSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEL 192          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_YLDV (Ribonucleoside-diphosphate reductase small chain OS=Yaba-like disease virus GN=20L PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.848e-71
Identity = 133/206 (64.56%), Postives = 156/206 (75.73%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL     ++ +FPI Y+ +W+MYKKA ASFWT EEVDLS+D   W +L D+EK+FI H+LAFFAASDGIV ENLA RF +++QI EAR FYGFQIAMENIHSEMYSLL++TYI DSKEK+ LFNAIEN+ CV +KA WA  WI S               + ++ ERLV FA VEGIFFSGSF AIFW+ KRGLMPGLTFSNEL
Sbjct:    6 EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLKLSDNEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIENMNCVKQKANWAKKWIES--------------KNRTYGERLVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNEL 197          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_LEIAM (Ribonucleoside-diphosphate reductase small subunit OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.168e-70
Identity = 125/217 (57.60%), Postives = 160/217 (73.73%), Query Frame = 3
Query:  144 NEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            ++V Q    ++EP+  E   R+ +FPI+Y  +W  YK+ E+  WT EE+DL  D++ W  L D E+HFI HVLAFFA SDGIV+ENLA RF++D+++PEARAFYGFQ+ MENIHSE YS+LL+TYI DS+EK RL +AI+ IPC+ +KA+W + WI                SS+SF +RL+GFA VEGIFFSGSFCA+FWL KRGLMPGLTFSNEL
Sbjct:   14 DKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWATLNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIG---------------SSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNEL 215          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_SWPVK (Ribonucleoside-diphosphate reductase small chain OS=Swinepox virus (strain Kasza) GN=C14L PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.877e-69
Identity = 127/206 (61.65%), Postives = 153/206 (74.27%), Query Frame = 3
Query:  177 EPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            EPIL E + RF +FPI+Y  +W+MYK++ ASFWT EEVDLS+D+  W++L   EK+FI H+LAFFA+SDGIV ENLA RF  D+Q  EAR FYGFQIAMENIHSEMYSLL++TY++D+ EK  LFNAIE + CV +KA WA  WI                S+  + ER+V FA VEGIFFSGSF AIFW+ KRGLMPGLTFSNEL
Sbjct:    2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDWDKLTKDEKYFIKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIETMECVKKKADWARKWI---------------SSNKVYGERVVAFAAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNEL 192          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_PLAF4 (Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.181e-68
Identity = 127/213 (59.62%), Postives = 159/213 (74.65%), Query Frame = 3
Query:  156 QREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            Q+ +E  E IL +++ RF ++PI Y  +W+ YKKAEASFWTAEE+DLS D++ +E+L ++EKHFI HVLAFFAASDGIVLENLA++FL ++QI EA+ FY FQIA+ENIHSE YSLL++ YIKD KE+  LF+AIENIP V  KA WA  WI+                ++SFAER+V  ACVEGI FSGSFCAIFW  K+  + GLTFSNEL
Sbjct:   24 QKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWIN---------------DTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNEL 221          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_YEAST (Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces cerevisiae GN=RNR2 PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 9.255e-68
Identity = 126/224 (56.25%), Postives = 160/224 (71.43%), Query Frame = 3
Query:  126 LKNETGNEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            LK+   +    +E E +EP+L E  +R  +FPI+Y ++W+ YK+AEASFWTAEE+DLS+D+  W  R+ ++E+ FIS VLAFFAASDGIV ENL   F  ++QIPEA++FYGFQI +ENIHSE YSLL++TYIKD KE   LFNAI  IP +  KA+WAL WI                + + F ERLV FA +EG+FFSGSF +IFWL KRG+MPGLTFSNEL
Sbjct:   59 LKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD--------------ADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNEL 268          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_CAEEL (Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis elegans GN=rnr-2 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.062e-67
Identity = 124/220 (56.36%), Postives = 155/220 (70.45%), Query Frame = 3
Query:  135 ETGNEVNQREQEDQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNEL 794
            ET NE    E +  EP+L + + RF +FP+++  +W  YKKA ASFWT EEVDL +D+  WE++   E++FIS +LAFFAASDGIV ENL  RF N++Q+ EAR FYGFQIA+ENIHSEMYS L+ETYI+D  E++ LFNA++    + +KA WAL WI                  +SFAERL+ FA VEGIFFSGSF +IFWL KRGLMPGLT SNEL
Sbjct:   48 ETNNESEVNELDADEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWISD--------------KKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNEL 253          
The following BLAST results are available for this feature:
BLAST of DN617771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RIR2B_PONAB2.780e-7259.09Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_MOUSE2.780e-7259.21Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2B_HUMAN3.631e-7259.09Ribonucleoside-diphosphate reductase subunit M2 B ... [more]
RIR2_VACCP4.742e-7263.11Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_YLDV6.848e-7164.56Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_LEIAM1.168e-7057.60Ribonucleoside-diphosphate reductase small subunit... [more]
RIR2_SWPVK2.877e-6961.65Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_PLAF43.181e-6859.62Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_YEAST9.255e-6856.25Ribonucleoside-diphosphate reductase small chain 1... [more]
RIR2_CAEEL2.062e-6756.36Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617771 ID=DN617771; Name=DN617771; organism=Citrus sinensis; type=EST; length=795bp
CAACAATTGAAAATCTGTCCACTTGCTCTCTTTAACAACAAGAGGTTTTT
GCAGGGTTTTATTACTTTTCTTTCTCTTCTCGCCACAAATAACGAAAACA
GAACTTGTGAGAAAAAATGGGTTCCTTGAAAAATGAAACAGGGAATGAAG
TAAACCAACGTGAACAGGAAGACCAAGAGCCAATATTAATGGAACAAAAC
CAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAACTTTGGGAGATGTA
CAAGAAGGCTGAAGCCAGTTTTTGGACCGCCGAGGAGGTTGATCTTTCCC
AGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACACTTTATA
AGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTTTGGAAAA
TTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCTCGAGCGT
TTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGATGTACAGC
TTGCTTCTGGAGACATACATCAAAGACTCAAAAGAGAAGCATAGATTGTT
TAATGCAATTGAAAACATTCCCTGTGTGGCTCGTAAGGCTAAATGGGCTC
TGGATTGGATTCATAGTTGATGCAAAGGGAGGTCTGTCATCTCATTGTGC
CCCATGTGCAGTTCCAGCTCATTTGCAGAGAGACTTGTAGGTTTTGCTTG
TGTTGAAGGAATCTTCTTTTCAGGAAGCTTTTGTGCCATATTCTGGCTTN
AAAAGAGGGGACTGATGCCAGGTTTGACGTTCTCAAACGAGCTTA
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