DN617771

Overview
NameDN617771
Unique NameDN617771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_ASFB7 (Ribonucleoside-diphosphate reductase small chain OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=Ba71V-044 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.723e-42
Identity = 82/207 (39.61%), Postives = 122/207 (58.94%), Query Frame = 3
Query:  171 DQEPILMEQNQRFCMFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNE 791
            + E +L+E +QRF +FPI++ + W  YKK E+  WTA+EVD+ +D+  WE +   ++ F   +LAFF  +D IV+ENL   F+ +I++ E   FY  Q A E +HSE YS+ ++T I D KE+ R+F+ IE  P + + A+W   W+                  ++  ERLVGFA VEGI F   F AI +L ++ +MPGL   NE
Sbjct:    7 NMEELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEAMPKPQREFYKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIEKHPIIKKMAQWVRQWMDP--------------DRNTLGERLVGFAAVEGILFQNHFVAIQFLKEQNIMPGLVSYNE 199          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_OSHV1 (Ribonucleoside-diphosphate reductase small chain OS=Ostreid herpesvirus 1 GN=ORF20 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.498e-17
Identity = 59/191 (30.89%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  219 PIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSSFAERLVGFACVEGIFFSGSFCAIFWLXKRGLMPGLTFSNE 791
            P  Y+QL +   K E+S W   E+D   D+  WE++ ++E+  +  VLAFFA  D +V + +A  F ++  +PE + F  +Q   E +H  +Y+  L+  +KD      L NA ++      K K  +DW+        +IS+     + S  E +VG  C E I F+ SF AI    +   M  L   NE
Sbjct:   76 PAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAPIKKK--VDWL------GKIISV----ENDSRGEMVVGQVCTEAIMFAASF-AILLKFRAPYMRALVLGNE 252          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_CHLTR (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia trachomatis GN=nrdB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 52/195 (26.67%), Postives = 88/195 (45.13%), Query Frame = 3
Query:  213 MFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHW--ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALD----WIHS*CKGRSVISLCPMCSSSSFAERLVGFACV-EGIFFSGSFCAIFWLXKRGLMPGL 776
            + PI+YK  WE Y    A+ W   E+ + +D++ W  +RL + E+  I   L FF+ ++ +V  N+       +  PEAR +   Q   E +H+  +  + E+   D KE   +FNA      +  K  + ++     +    +  SV  L        F + LVG+  + EGIFF   F  I    ++  M G+
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGL------QEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGI 216          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_CHLPN (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia pneumoniae GN=nrdB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 54/197 (27.41%), Postives = 87/197 (44.16%), Query Frame = 3
Query:  213 MFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHW--ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALDWIHS*CKGRSVISLCPMCSSSS------FAERLVGFACV-EGIFFSGSFCAIFWLXKRGLMPGL 776
            + PI+YK  WE Y    A+ W   EV +++D++ W  + L + E+  I   L FF+ ++ +V  N+       I  PEAR +   Q   E +H+  +  + E+   D  E   +FNA      +  K  + +          +V  L P  S  S      F + LVG+  + EGIFF   F  I    ++  M G+
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKSDELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEGE---VFNAYNERASIRAKDDFQMT--------LTVDVLDPNFSVQSSEGLGQFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMTGI 216          
BLAST of DN617771 vs. ExPASy Swiss-Prot
Match: RIR2_CHLMU (Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia muridarum GN=nrdB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 51/195 (26.15%), Postives = 87/195 (44.62%), Query Frame = 3
Query:  213 MFPIRYKQLWEMYKKAEASFWTAEEVDLSQDVQHWER--LLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVARKAKWALD----WIHS*CKGRSVISLCPMCSSSSFAERLVGFACV-EGIFFSGSFCAIFWLXKRGLMPGL 776
            + PI+YK  WE Y    A+ W   E+ + +D++ W+   L + E+  I   L FF+ ++ +V  N+       +  PEAR +   Q   E +H+  +  + E+   D KE   +FNA      +  K  + ++     +    +  SV  L        F + LVG+  + EGIFF   F  I    ++  M G+
Sbjct:   31 LVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELWKSNVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGL------QEFIKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMVGI 216          
The following BLAST results are available for this feature:
BLAST of DN617771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RIR2_ASFB78.723e-4239.61Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_OSHV11.498e-1730.89Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_CHLTR9.406e-1226.67Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLPN6.097e-1127.41Ribonucleoside-diphosphate reductase subunit beta ... [more]
RIR2_CHLMU6.097e-1126.15Ribonucleoside-diphosphate reductase subunit beta ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617771 ID=DN617771; Name=DN617771; organism=Citrus sinensis; type=EST; length=795bp
CAACAATTGAAAATCTGTCCACTTGCTCTCTTTAACAACAAGAGGTTTTT
GCAGGGTTTTATTACTTTTCTTTCTCTTCTCGCCACAAATAACGAAAACA
GAACTTGTGAGAAAAAATGGGTTCCTTGAAAAATGAAACAGGGAATGAAG
TAAACCAACGTGAACAGGAAGACCAAGAGCCAATATTAATGGAACAAAAC
CAGAGGTTTTGTATGTTCCCCATAAGGTACAAGCAACTTTGGGAGATGTA
CAAGAAGGCTGAAGCCAGTTTTTGGACCGCCGAGGAGGTTGATCTTTCCC
AGGATGTACAGCACTGGGAACGACTATTGGATTCTGAGAAACACTTTATA
AGCCATGTGTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTTTGGAAAA
TTTGGCTGCAAGGTTCCTAAATGACATTCAAATTCCAGAGGCTCGAGCGT
TTTATGGATTTCAAATAGCAATGGAGAATATTCATTCTGAGATGTACAGC
TTGCTTCTGGAGACATACATCAAAGACTCAAAAGAGAAGCATAGATTGTT
TAATGCAATTGAAAACATTCCCTGTGTGGCTCGTAAGGCTAAATGGGCTC
TGGATTGGATTCATAGTTGATGCAAAGGGAGGTCTGTCATCTCATTGTGC
CCCATGTGCAGTTCCAGCTCATTTGCAGAGAGACTTGTAGGTTTTGCTTG
TGTTGAAGGAATCTTCTTTTCAGGAAGCTTTTGTGCCATATTCTGGCTTN
AAAAGAGGGGACTGATGCCAGGTTTGACGTTCTCAAACGAGCTTA
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