DN617760

Overview
NameDN617760
Unique NameDN617760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5749 contig Csv1_Contig5749:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 69/166 (41.57%), Postives = 101/166 (60.84%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 499
            +T+ ++SWG    SFV+W+  +FS  LLP+YFKH+NFSSFIRQLN YGFRKID +RWEFAN+ F+R   HLL NI RRK         SLQ   ++  P  + +   L +E+  LK  K+ L  +L +  Q Q   + ++  +  R+  ME+ Q+ +++ L   +Q
Sbjct:   33 ATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHS----HSLQ--NQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQ 192          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 73/181 (40.33%), Postives = 104/181 (57.46%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENN 544
            +TD +I+WG+ + SFV+ D   FS  LLP +FKHSNFSSF+RQLN YGFRK+D DRWEFA+  F+R Q HLL  I RR +  G  +RK           C     +A   +V+   A    +  E+ +LR+ Q   + ++  +  RVQ  E+  +QML+FLV  + +P  L +L+     N
Sbjct:   27 ATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSSGGGGAKRKEEAGG------CGGGGEAAAG-DVDEESA---VVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKVVGDPQVLRRLVDRDNTN 197          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 65/181 (35.91%), Postives = 108/181 (59.67%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENN 544
            STD+++ W  +  SFV+ +  EF   LLP+YFKH+NFSSF+RQLN YGFRK+D ++WEFAN+ F++ Q+H L NI RRK         S  Q    +   E+ D+    +E+E LK+   AL+ EL      +   + ++  L +++  +E  Q+ ++S++   ++ P FL   +Q ++++
Sbjct:   25 STDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPI---FSHSSHSQGAGPLTDNERKDYE---EEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHH 199          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 72/210 (34.29%), Postives = 106/210 (50.48%), Query Frame = 2
Query:    5 TDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNT---------------QGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGNMLEEVTE 589
            TD+++ WG+ N SFV+ D   FS  LLP +FKH NFSSF+RQLN YGFRK+  DRWEFA++ F+R Q HLL  I RRK                  G+ + +    +  +    E+ D        E++ A + AL +E+ +LR  Q     +L  +  R+Q  E+   Q++SFL     +P+               A  G++LE+  E
Sbjct:   40 TDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEED------AAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQLMSFLAKLADDPN---------------AVTGHLLEQAAE 228          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 69/181 (38.12%), Postives = 99/181 (54.70%), Query Frame = 2
Query:    5 TDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQ-------GSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLL 526
            TD +I WG+ N SFV+ D   FS  LLP +FKH+NFSSF+RQLN YGFRK+D DRWEFA+  F+R Q HLL NI RR +         G  +R+            E +                  +  E+++L+Q Q T D+++  +  RVQ  E+  +QML+FL+  + +   L +L+
Sbjct:   25 TDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRRDASADGGGGGGDEDM----------------TMVATEVVRLKQEQRTIDDRVAAMWRRVQETERRPKQMLAFLLKVVGDRDKLHRLV 189          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKS 268
            +TD ++SWG  + +FV+W   EF+  LLP YFKH+NFSSF+RQLN YGFRKI  DRWEFAN+ F R +KHLL  I RRK +Q   Q+ S
Sbjct:   47 ATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQMIPQQHS 135          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.489e-24
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSE 256
            STD ++SWG+   +FV+W   EF+  LLP YFKH+NFSSF+RQLN YGFRKI  DRWEFAN+ F +  KHLL+ I RRK++  S+
Sbjct:   49 STDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSSCSQ 133          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 63/191 (32.98%), Postives = 100/191 (52.36%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQ--RKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGN 568
            ST++++ WG +  +F++ D   FS  LLP YFKH NF+SF+RQLN YGFRK+D DRWEFA++ F+R Q  LL  I R+K   G+    R+  ++ E++    E +                        +LR+ Q   + +L  +  R++  E    QM++FL      P  +++ +  K+    +A AGN
Sbjct:   37 STNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKKKKGGAAPGCRELCEEGEEVRGTIEAVQ-----------------------RLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPGVVLRAMLAKKE--ELAAAGN 202          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 2
Query:    5 TDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQ 247
            TD I+SWG+ + +FV+W   EF+  LLP YFKH+NFSSF+RQLN YGFRKI  DRWEFAN+ F +  KHLL  I RRK++Q
Sbjct:   48 TDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQ 128          
BLAST of DN617760 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 STDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNT 244
            STD  ISW  S  +FV+W   EF+  LLP++FKHSNFSSF+RQLN YGF+K+  DRWEFAND F R +KHLL  I RRK +
Sbjct:   23 STDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGS 103          
The following BLAST results are available for this feature:
BLAST of DN617760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFA4D_ORYSJ3.964e-3041.57Heat stress transcription factor A-4d OS=Oryza sat... [more]
HFC2A_ORYSJ1.275e-2840.33Heat stress transcription factor C-2a OS=Oryza sat... [more]
HFA4B_ORYSJ6.329e-2835.91Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFC1A_ORYSJ3.473e-2634.29Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFC2B_ORYSJ4.536e-2638.12Heat stress transcription factor C-2b OS=Oryza sat... [more]
HSFB4_ARATH1.906e-2458.43Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4D_ORYSJ2.489e-2458.82Heat stress transcription factor B-4d OS=Oryza sat... [more]
HFC1B_ORYSJ3.251e-2432.98Heat stress transcription factor C-1b OS=Oryza sat... [more]
HFB4B_ORYSJ7.242e-2461.73Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB2A_ORYSJ9.458e-2461.73Heat stress transcription factor B-2a OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617760 ID=DN617760; Name=DN617760; organism=Citrus sinensis; type=EST; length=738bp
GTCAACCGACTCGATAATCTCTTGGGGTCAAAGCAATGAGAGTTTTGTCA
TATGGGATGTGACTGAGTTTTCAGTTCAGTTGTTGCCTAGGTACTTCAAG
CACAGTAACTTCTCCAGCTTCATCAGGCAACTCAATATCTATGGGTTTAG
AAAAATTGACACAGACCGTTGGGAATTTGCAAATGATGGATTCGTTAGAG
ATCAGAAGCATTTGTTGAACAATATTTGTAGAAGGAAAAATACTCAAGGG
TCTGAGCAGCGAAAATCATTGCAGCAGTCAGAAAAGTTGGTTGAACCATG
TGAGAAAATTGACCATTCGGCACTGTGGAAGGAAGTTGAGAATTTGAAGG
CTGGTAAAAATGCACTTACACAGGAGTTGCTGAAACTTAGGCAGTACCAG
GAGACTGCAGATAATAAGTTGCTTCTCTTGAGGGACCGTGTTCAAGGAAT
GGAAAAAAGCCAGCAGCAGATGTTGTCATTCTTAGTGATGGCCATGCAAA
ATCCAAGTTTTTTGGTTCAGCTACTTCAACCAAAAGAAAATAACTGGCGC
ATGGCTGAAGCAGGCAATATGCTCGAAGAAGTTACAGAGGTTGGTGAACC
AATAGCTTCTGATAATATGTTAGTAAGATATCACCCACCAATAGATGAAA
CACCGAAGCCTGTTCTCAAACCAGTGACAGATTCANGAAACCAAATGGCA
TCTGATACTTCTGACGGCATGAAAGACGTATTCATGAA
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