DN617758

Overview
NameDN617758
Unique NameDN617758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5818 contig Csv1_Contig5818:17..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.954e-52
Identity = 113/142 (79.58%), Postives = 114/142 (80.28%), Query Frame = -3
Query:  239 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 664
            VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   24 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.954e-52
Identity = 113/142 (79.58%), Postives = 114/142 (80.28%), Query Frame = -3
Query:  239 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 664
            VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   23 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.552e-52
Identity = 113/142 (79.58%), Postives = 114/142 (80.28%), Query Frame = -3
Query:  239 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 664
            VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK Y+LFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   24 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 81/109 (74.31%), Postives = 81/109 (74.31%), Query Frame = -3
Query:  239 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 565
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 81/138 (58.70%), Postives = 97/138 (70.29%), Query Frame = -3
Query:  260 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-NPKA--KSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 664
            +F+ +GAAYGTAKSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+                G+AIGIVGDAGVRA+AQQ KL+VGM           LYGLIVG+IL+S+
Sbjct:   22 IFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLIVGLILTSK 159          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = -3
Query:  257 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRA 664
            VF+C+GA+YGTAKSGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS  +      Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV ++++S+A
Sbjct:   22 VFTCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALT--QDHYALYTGFIQLGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSKA 155          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = -3
Query:  260 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 664
            +FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   21 IFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.901e-31
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = -3
Query:  260 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 664
            +FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   21 IFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = -3
Query:  260 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 664
            +FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++   K Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   24 IFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = -3
Query:  260 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 664
            +FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   +K Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   26 IFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159          
The following BLAST results are available for this feature:
BLAST of DN617758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_TOBAC1.954e-5279.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC1.954e-5279.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AVESA2.552e-5279.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE9.119e-3474.31V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_PLECA5.911e-3358.70V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEUCR1.456e-3150.74V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI1.456e-3151.85V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE1.901e-3151.85V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE1.610e-3052.59V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DROME2.102e-3052.59V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617758 ID=DN617758; Name=DN617758; organism=Citrus sinensis; type=EST; length=696bp
AAGGATGGTTCTTTCATATGTCTGATTTCACAGTAAAAATACAACAATAC
AAGCTGAGAACTCGAGCATTATTTTAAGGGGAAAATCTTGCCCTTAATGG
TACAGACAGAATGGAGCTACTTAATAATCTAGTGGGATATTGACAACCAA
CTCAACATTTCCCATGGTGTCCTAGCATCATCTACGTGAGCATGACCAAA
TAATTTTGAGAAACCTATGTTCTGAACCACGCATCCTAATCTGCTCTGGA
TTGGCCAGCTCGGGAAGAGAGAATAATGCCAACAATGAGACCATACAACG
CCAATGCCTCAGCAAAAATGAGAATGAGAATCATTCCAACAAAAAGCTTT
GGTTGCTGTGCATTAGCTCTGACACCAGCATCACCAACGATGCCAATAGC
CATACCAGCAGAGAGACCAGCGAGGCCGCAAGCGAGACCCGAAGACAAAT
GAGCGTAGCCATCGAATAGATAATATGATTTGGCCTTTGGGTTAATGCCA
GTACTAATAATAACAGCAATAATTAAACCATAAATACCTAACACTCCCGC
CATCACAACTGGCACAATCGATTTCATTACAAGCTCTGGCCTCATCACTC
CCATCGATGCTACGCCCACTCCACTCTTCGCCGTCCCATACGCTGCTCCC
ATGCAGGAGAAAACAAGGGCGGCAGCGGCGCCGAGGAAGCCGAAAA
back to top