DN617758

Overview
NameDN617758
Unique NameDN617758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5818 contig Csv1_Contig5818:17..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.194e-25
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = -3
Query:  260 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 664
            VFSC+GA YGTA +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                G AIG+VGD GV++  +Q ++FV M           LYGLIVG+IL ++
Sbjct:   23 VFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 62/139 (44.60%), Postives = 82/139 (58.99%), Query Frame = -3
Query:  248 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQS 664
            VF+  G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                GMAIGI GD GVR  AQQPKLFVGM           LYG IV +I++S    S
Sbjct:   31 VFTVFGGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIFSEALALYGFIVALIMASTGENS 167          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.251e-24
Identity = 57/138 (41.30%), Postives = 85/138 (61.59%), Query Frame = -3
Query:  257 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRA 664
            +F   GAAYGTAKSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                G  IGIVGD GVR+   Q ++FVGM           LYGLIV +IL++++
Sbjct:   28 IFGSAGAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEVLGLYGLIVALILNTKS 165          
BLAST of DN617758 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.550e-24
Identity = 61/139 (43.88%), Postives = 81/139 (58.27%), Query Frame = -3
Query:  248 VFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQS 664
            VF+  G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                GM+IGI GD GVR  AQQPKLFV M           LYG IV +I+++    S
Sbjct:   29 VFTVFGGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIFSEALALYGFIVALIMAATGDNS 165          
The following BLAST results are available for this feature:
BLAST of DN617758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_SCHPO1.194e-2543.70V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTHI1.320e-2444.60V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_NEUCR2.251e-2441.30V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTDI6.550e-2443.88V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617758 ID=DN617758; Name=DN617758; organism=Citrus sinensis; type=EST; length=696bp
AAGGATGGTTCTTTCATATGTCTGATTTCACAGTAAAAATACAACAATAC
AAGCTGAGAACTCGAGCATTATTTTAAGGGGAAAATCTTGCCCTTAATGG
TACAGACAGAATGGAGCTACTTAATAATCTAGTGGGATATTGACAACCAA
CTCAACATTTCCCATGGTGTCCTAGCATCATCTACGTGAGCATGACCAAA
TAATTTTGAGAAACCTATGTTCTGAACCACGCATCCTAATCTGCTCTGGA
TTGGCCAGCTCGGGAAGAGAGAATAATGCCAACAATGAGACCATACAACG
CCAATGCCTCAGCAAAAATGAGAATGAGAATCATTCCAACAAAAAGCTTT
GGTTGCTGTGCATTAGCTCTGACACCAGCATCACCAACGATGCCAATAGC
CATACCAGCAGAGAGACCAGCGAGGCCGCAAGCGAGACCCGAAGACAAAT
GAGCGTAGCCATCGAATAGATAATATGATTTGGCCTTTGGGTTAATGCCA
GTACTAATAATAACAGCAATAATTAAACCATAAATACCTAACACTCCCGC
CATCACAACTGGCACAATCGATTTCATTACAAGCTCTGGCCTCATCACTC
CCATCGATGCTACGCCCACTCCACTCTTCGCCGTCCCATACGCTGCTCCC
ATGCAGGAGAAAACAAGGGCGGCAGCGGCGCCGAGGAAGCCGAAAA
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