DN617744

Overview
NameDN617744
Unique NameDN617744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.935e-31
Identity = 68/139 (48.92%), Postives = 89/139 (64.03%), Query Frame = 3
Query:   45 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 461
            +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K +    K    L+     ++VF  + P+EIPW   G+ +VVE+TGV+                V+I APS DAPMFV+GVNE EY P
Sbjct:   65 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKGQ--LVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPSPDAPMFVMGVNEKEYNP 200          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 3.935e-31
Identity = 66/143 (46.15%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            V++ INGFGRIGRLV R+ LQR +VE+VA+NDPFI+ DY  YMFKYDS HG++        DDK ++     +  F  R+P  +PWA    +  ++STGVF                V+I+APS  APMFV+GVNE +Y  +L
Sbjct:    2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGE--VSHDDKHIIVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.935e-31
Identity = 67/139 (48.20%), Postives = 87/139 (62.59%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 455
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG++        D K+L+   K V VF  R+P  +PW     +  ++STG+F                V+I+APS  APMFVVGVNE++Y
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGE--VSHDGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.139e-31
Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   36 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 461
            ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW + G+ YVVESTGV+                V+ISAPS DAP FV+GVNEN Y P
Sbjct:   76 ELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRDVGSPYVVESTGVYLSIEAASNHISAGAQRVVISAPSPDAPTFVMGVNENNYNP 214          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.139e-31
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 455
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG++        D K L+   K V VF  R+P  +PW     +  ++STG+F                V+I+APS  APMFVVGVNE++Y
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGE--VSHDGKALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.712e-31
Identity = 74/145 (51.03%), Postives = 93/145 (64.14%), Query Frame = 3
Query:   36 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            + K+GINGFGRIGRLV R    ++ V++V+VNDPFI  +YM YM K DS HG +   E+  ++ K  + G K ++V   R+P  IPW + GAEYVVESTGVF T               VIISAPS DAPMFVVGVNEN Y+  +
Sbjct:    3 RAKVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFP-GEVSTENGKLKVNG-KLISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPSADAPMFVVGVNENSYEKSM 145          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 6.712e-31
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 464
            ++I INGFGRIGRLV R+ LQR D+E+VAVNDPFI+ DY  YM KYDS HG++K       DDK ++     +  +  R+P  +PW     +  V+STGVF                V+I+APS  APMFVVGVN  +Y P+
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYK--GTVSHDDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSSAPMFVVGVNHTKYTPD 141          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.953e-30
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   36 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 461
            ++ +GINGFGRIGRLV RV +++  V +VAVNDPFI  +YM YMFKYDS HG++K   ++ K+ + L+     + VF  + P+EIPW+  G  YVVE+TGV+                VI++APS DAPM V+GVNE +Y P
Sbjct:   99 ELTVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GTVEHKNGR-LVVDNLEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNP 237          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.682e-30
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 3
Query:   36 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKP 461
            ++ +GINGFGRIGRLV RV +++  + +VAVNDPFI  +YM YMFKYDS HG++K + ++ K+ + L+     +  +  ++P+EIPW+  G  YVVE TGV+                V+++APS DAPMFV+GVNE +Y P
Sbjct:  107 ELTVGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGN-VEHKNGQ-LVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNP 245          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.421e-30
Identity = 66/144 (45.83%), Postives = 88/144 (61.11%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            + + INGFGRIGRLV R   +   + +VA+NDPF++T YM YM +YD+VHG++   +  +  D+T +F   KP+ VF   NPE I W E   +YVVESTG FT               V+ISAPS DAPMFV+GVN   Y+  +
Sbjct:    1 MNVAINGFGRIGRLVLRASAKNPLINIVAINDPFVSTTYMEYMLEYDTVHGKF---DGSLSHDETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAFTTLEKASTHLKNGVEKVVISAPSSDAPMFVMGVNHELYEKNM 141          
The following BLAST results are available for this feature:
BLAST of DN617744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
G3PT_BOVIN3.935e-3148.92Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_YEAST3.935e-3146.15Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P2_KLUMA3.935e-3148.20Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3PT_MACFA5.139e-3147.18Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_KLUMA5.139e-3148.20Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P_SCHMA6.712e-3151.03Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P1_YEAST6.712e-3146.48Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3PT_RAT1.953e-3047.89Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_MOUSE5.682e-3045.77Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PHYIN7.421e-3045.83Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01K03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617744 ID=DN617744; Name=DN617744; organism=Citrus sinensis; type=EST; length=467bp
ACCGCTCAATTTCATCGTCTCGAGAATCATCGGGGAAGGTCAAGATCGGA
ATCAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCA
GAGGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCG
ATTACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAG
CACCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAA
GCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTG
AGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACTGACAAG
GATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTC
AGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTCGGTGTCAATGAAAACG
AGTACAAACCAGAGCTC
back to top