DN617744

Overview
NameDN617744
Unique NameDN617744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:354..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.341e-38
Identity = 80/143 (55.94%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            +K+GINGFGRIGR+V R  L+  +VE+VAVNDPFI T+Y  YMFKYDS HG++K  +++ KD   ++ G K + VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFVVGVN + YKP++
Sbjct:    3 IKVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKG-KVEAKDGGLIIDG-KHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDM 143          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.268e-37
Identity = 74/141 (52.48%), Postives = 93/141 (65.96%), Query Frame = 3
Query:   45 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            +GINGFGRIGRLV R+ L RDD+ ++A+NDPFI  DY  YMFKYDS HG++K       + K L+   K + VF  R+P  IPW + G +YV++STGVFT               VII+APSKDAPMFVVGVN  EY P++
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHGKFK--GTVTHEGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSKDAPMFVVGVNHEEYTPDI 143          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.186e-37
Identity = 77/139 (55.40%), Postives = 98/139 (70.50%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEY 455
            VK+GINGFGRIGR+V R  LQ  ++E+VA+NDPFI  DYM YMFKYD+VHG++K   ++VKD K ++ G   +TVF  +NP +I W   GA+Y+VESTGVFT               V+ISAPS DAPMFVVGVN ++Y
Sbjct:    3 VKVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYK-GTVEVKDGKLVVDGH-AITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPSADAPMFVVGVNLDKY 139          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.069e-36
Identity = 77/145 (53.10%), Postives = 97/145 (66.90%), Query Frame = 3
Query:   33 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            GKVK+GINGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 GKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-NPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.396e-36
Identity = 76/145 (52.41%), Postives = 97/145 (66.90%), Query Frame = 3
Query:   33 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            GKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-NPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.396e-36
Identity = 78/142 (54.93%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 464
            VK+GINGFGRIGR+V R  LQ  D+E+VAVNDPFI  +YM YMFKYDSVHG++K   ++VK+   ++ G +P+ VF  R+P  IPW   GA+YVVESTGVFT               V+ISAPS DAPM+V GVN ++Y P+
Sbjct:    2 VKVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFK-GTVEVKNGSFVVDG-RPMKVFAERDPAAIPWGSVGADYVVESTGVFTTIDKASAHLKGGAKKVVISAPSADAPMYVCGVNLDKYNPK 141          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.824e-36
Identity = 79/143 (55.24%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            +K+GINGFGRIGR+V R   Q  +VE+VAVNDPFI  +Y  YM KYDS HGQ+      V+D   L+   + V  +  RNPEEIPWAETGAEY+VESTGVFT               VIISAPS DAPMFV+GVN   Y  +L
Sbjct:    4 IKVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG--LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMFVMGVNHKSYTTDL 144          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.382e-36
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   42 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            K+GINGFGRIGRLV R  +++   ++VA+NDPFI  DYM YM KYDS HG++   ++ +KD K  + G   +TVF  R+P EIPWA   A+Y+VE+TGVFT               V+ISAPSKDAPMFV GVNE +Y P+L
Sbjct:    5 KVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYAG-DVSIKDGKLQVDGNS-ITVFAHRDPAEIPWATAAADYIVEATGVFTLKDKAAAHFKGGAKKVVISAPSKDAPMFVCGVNEAKYTPDL 144          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.111e-36
Identity = 75/143 (52.45%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPEL 467
            VK+GINGFGRIGR+V R  ++ DDVE+VAVNDPFI T Y  YM KYDS HGQ+K  +++      L    K +  +  R+P  IPW + G +YVVESTGVFT               VIISAPS DAPMFV+GVNE  Y+P++
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFK-GDIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVIISAPSADAPMFVMGVNEKSYRPDI 144          
BLAST of DN617744 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.063e-36
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 3
Query:   39 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNENEYKPE 464
            VK+GINGFGRIGR+V R  +   D+++VA+NDPFI  +YM YMFKYDS HG +K   +++KD K ++ G KP+ V+G R+P  I W   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN ++Y P+
Sbjct:    3 VKVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHGVFK-GSVEIKDGKLVIEG-KPIVVYGERDPANIQWGAAGADYVVESTGVFTTQEKAELHLKGGAKKVVISAPSADAPMFVCGVNLDKYDPK 142          
The following BLAST results are available for this feature:
BLAST of DN617744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
G3P_YARLI4.341e-3855.94Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PICAN6.268e-3752.48Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_SCHCO8.186e-3755.40Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PONAB1.069e-3653.10Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_HUMAN1.396e-3652.41Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P2_AGABI1.396e-3654.93Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_ERYGR1.824e-3655.24Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3PC_CHOCR2.382e-3652.82Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PARBA3.111e-3652.45Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PHARH4.063e-3652.82Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617744 ID=DN617744; Name=DN617744; organism=Citrus sinensis; type=EST; length=467bp
ACCGCTCAATTTCATCGTCTCGAGAATCATCGGGGAAGGTCAAGATCGGA
ATCAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCA
GAGGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCG
ATTACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAG
CACCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAA
GCCTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTG
AGACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACTGACAAG
GATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTC
AGCCCCCAGCAAGGATGCTCCTATGTTTGTTGTCGGTGTCAATGAAAACG
AGTACAAACCAGAGCTC
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