DN617742

Overview
NameDN617742
Unique NameDN617742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2854 contig Csv1_Contig2854:365..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  292 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPT 540
            SN AT T++ P+L  +A+ +HV+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K GL + I G+A +   M T
Sbjct:  489 SNPATITILFPILSPLAEAIHVNPLHILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFT 571          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 32/89 (35.96%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 540
            SN ATTTL+LP+L  +A+ + +HPL +M+P  + +  +F+LP  TP N + F+ G + + DM + G+ L I G+  +   + + G  +F
Sbjct:  478 SNAATTTLLLPILASMAQAICLHPLYVMLPCTLASSLAFMLPVATPPNAIVFSFGGLRVSDMARAGIMLNIIGVLVIMLAINSWGVPMF 566          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = -3
Query:  292 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPT 540
            SN AT T++ P+L  +A+ + V+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K GL + I G+A +   M T
Sbjct:  488 SNPATITILFPILSPLAEAIQVNPLQILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFT 570          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F+LP  TP N + F+ G +++ DM + G  L I G+ A    + +    +F  D
Sbjct:  470 SNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLATTLSINSWSIPIFKLD 561          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F+LP  TP N + F+ G +++ DM + G  L I G+  +   + +    +F  D
Sbjct:  470 SNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLTITLSINSWSIPIFKLD 561          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 540
            SN ATTT+ LP+L  +A+ + +HPL +M+P  +    +F+LP  TP N + F+ G +++ DM + G  L I G+  +A  + + G  +F
Sbjct:  475 SNVATTTIFLPILASMAQAICLHPLYVMLPCTLATSLAFMLPVATPPNAIVFSFGDLKVLDMARAGFLLNIIGVLIIALAINSWGIPLF 563          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYIMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
The following BLAST results are available for this feature:
BLAST of DN617742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
S13A1_RAT4.081e-1339.76Solute carrier family 13 member 1 OS=Rattus norveg... [more]
S13A2_RABIT1.551e-1235.96Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A1_MOUSE2.645e-1238.55Solute carrier family 13 member 1 OS=Mus musculus ... [more]
S13A2_RAT3.455e-1236.96Solute carrier family 13 member 2 OS=Rattus norveg... [more]
S13A2_MOUSE4.512e-1235.87Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A2_HUMAN7.697e-1235.96Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
SDCS_STAAR2.239e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW2.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS2.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN2.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617742 ID=DN617742; Name=DN617742; organism=Citrus sinensis; type=EST; length=542bp
AAATTATATTTTCGAACTATATATCGTTCAATAAAAGGGAAAAAACTCAA
TATGGTGTGCTAACCACTAAGGGAAGCATTCATTAGGCACGCAAATATAC
AATAGGCGTCTTTTCTTATAGGAAAAGCATCAATTTTTATCATCATCTCA
TCAAACACTAGCATTGCTATAATTCCTATTCAGGGTCCCCCAATGCCTGT
TACGGAGACTTGATTGAGAGAAACCTCCACAGTTTACAAGAGTTTGCAGC
TACTGAACATCCCCATCTGTCCCAAAAACATAAGCACCAAGTGTAGGCAT
TAGAAAGGCCAGAGCAGCAATGCCAGCAATCTTAAGGGGCAGCCCTGTCT
TGATCATATCTTGAATTTCGATGTGCCCGGTTGTGAATCCAACAATATTT
GAAGGGGTTCCAGTCGGCAACAAGAAAGAAAATTGTGCTCCAATTGCTCC
AGGAACCATAAGAAGCAATGGATGAACATGCATAGTTTTTGCTATTTGGA
TCAGAAGTGGAAGAACGAGAGTTGTTGTGGCATTATTTGATG
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