DN617742

Overview
NameDN617742
Unique NameDN617742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2854 contig Csv1_Contig2854:365..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAAB (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: SDCS_STAA3 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain USA300) GN=sdcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  265 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 540
            SN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  421 SNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of DN617742 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  274 SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 540
            +N+AT ++ +P+  ++A+ +  HPL   +P AIG  FSF+LP  TP+N + + T  I + DM+  G+ L I  IA  A  M T   ++F
Sbjct:  465 TNSATASIFIPISFKMAEAVGAHPLYFSIPTAIGPSFSFMLPMATPANAIVYETKTIRMIDMVSCGVFLNIFCIAITAINMNTWAFWLF 553          
The following BLAST results are available for this feature:
BLAST of DN617742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SDCS_STAAM2.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC2.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAB2.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA82.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA32.925e-1135.87Sodium-dependent dicarboxylate transporter sdcS OS... [more]
YKG6_CAEEL6.516e-1137.08Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617742 ID=DN617742; Name=DN617742; organism=Citrus sinensis; type=EST; length=542bp
AAATTATATTTTCGAACTATATATCGTTCAATAAAAGGGAAAAAACTCAA
TATGGTGTGCTAACCACTAAGGGAAGCATTCATTAGGCACGCAAATATAC
AATAGGCGTCTTTTCTTATAGGAAAAGCATCAATTTTTATCATCATCTCA
TCAAACACTAGCATTGCTATAATTCCTATTCAGGGTCCCCCAATGCCTGT
TACGGAGACTTGATTGAGAGAAACCTCCACAGTTTACAAGAGTTTGCAGC
TACTGAACATCCCCATCTGTCCCAAAAACATAAGCACCAAGTGTAGGCAT
TAGAAAGGCCAGAGCAGCAATGCCAGCAATCTTAAGGGGCAGCCCTGTCT
TGATCATATCTTGAATTTCGATGTGCCCGGTTGTGAATCCAACAATATTT
GAAGGGGTTCCAGTCGGCAACAAGAAAGAAAATTGTGCTCCAATTGCTCC
AGGAACCATAAGAAGCAATGGATGAACATGCATAGTTTTTGCTATTTGGA
TCAGAAGTGGAAGAACGAGAGTTGTTGTGGCATTATTTGATG
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