DN617738

Overview
NameDN617738
Unique NameDN617738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_RAT (Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 3.207e-21
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P  FL   ++ +A   GKP  Y+AVHV PDQ + F G+SDP    +L SIGK+G   N+ ++K +   +S  L I  DR+YI + D   + VG+NGSTF
Sbjct:    1 MPMFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_MOUSE (Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P  FL   ++ +A   GKP  Y+AVHV PDQ + F G++DP    +L SIGK+G   N+ ++K +   +S  L I  DR+YI + D   + VG+NGSTF
Sbjct:    1 MPMFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_MACMU (Macrophage migration inhibitory factor OS=Macaca mulatta GN=MIF PE=3 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P  FL   ++ +A   GKP  Y+AVHV PDQ + FGGSS+P    +L SIGK+G   N+ ++K +   +++ L I  DR+YI + D   + VG+N STF
Sbjct:    1 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_MACFA (Macrophage migration inhibitory factor OS=Macaca fascicularis GN=MIF PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P  FL   ++ +A   GKP  Y+AVHV PDQ + FGGSS+P    +L SIGK+G   N+ ++K +   +++ L I  DR+YI + D   + VG+N STF
Sbjct:    1 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_HUMAN (Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P  FL   ++ +A   GKP  Y+AVHV PDQ + FGGSS+P    +L SIGK+G   N+ ++K +   +++ L I  DR+YI + D   + VG+N STF
Sbjct:    1 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF_MERUN (Macrophage migration inhibitory factor OS=Meriones unguiculatus GN=MIF PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 9.330e-21
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = -2
Query:  200 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGSTF 541
            MP F ++TN+ +  +P   L   ++ +A   GKP  Y+AVHV PDQ + F GSSDP    +L SIGK+G   N+ ++K +   ++  L I  DR+YI + D   + VG+NGSTF
Sbjct:    1 MPMFIVNTNVPRSSVPEGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGSSDPCALCSLHSIGKIGGAQNRTYSKLLCGLLADRLRISPDRIYINYYDMNAANVGWNGSTF 114          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: MIF2_CAEEL (MIF-like protein mif-2 OS=Caenorhabditis elegans GN=mif-2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = -2
Query:  203 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLGIEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGST 541
            MP  ++ TN+  +K+P DF    + L+A ++GKP   +AV +     L+ G + DP    ++ SIG +  E N ++  AI +   K LG+PKD++ I F D  P+TVG+NG+T
Sbjct:    1 MPMVRVATNLPNEKVPVDFEIRLTDLLARSMGKPRERIAVEIAAGARLVHGATHDPVTVISIKSIGAVSAEDNIRNTAAITEFCGKELGLPKDKVVITFHDLPPATVGFNGTT 113          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DOPDB_XENLA (D-dopachrome decarboxylase-B OS=Xenopus laevis GN=ddt-B PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.629e-15
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = -2
Query:  206 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGS 541
            MPF +LDTN+ + ++P D  +      A  LGKP   V V V    +++ GGSS P     + SIG +G  E NK+H+   ++ +++ LG+ +DR+ ++FV   P  +G NG+
Sbjct:    1 MPFVELDTNLQQQEVPQDLAEKLCSATATILGKPRERVNVTVRTGVSMVVGGSSAPCTQLIISSIGVVGTAEQNKEHSAKFFNFLTEQLGLAQDRILLRFVPLEPWQIGKNGT 113          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DOPDA_XENLA (D-dopachrome decarboxylase-A OS=Xenopus laevis GN=ddt-A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.226e-14
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  206 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGS 541
            MPF +L+TN+    +P D  +      A  LGKP   V V V    +++ GGSS P     + SIG +G  E NK+H+   ++ +++ LG+ +DR+ ++FV   P  +G NG+
Sbjct:    1 MPFVELETNLPSQNVPQDLAEKLCSATATILGKPRERVNVTVRTGVSMVVGGSSAPCTQLFISSIGVVGTAEQNKEHSAKFFNFLTEQLGLAQDRILLRFVPIEPWQIGKNGT 113          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DOPD_XENTR (D-dopachrome decarboxylase OS=Xenopus tropicalis GN=ddt PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = -2
Query:  218 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVG 541
            MPF +LDTN+   ++P D  +      A  L KP   V V V    +++ GGS  P     + SIG +G  E NK+H+   +  +++N+G+ +DR+ ++FV   P  VG
Sbjct:    1 MPFVELDTNLPPQQVPQDLAEKLCSATATILSKPRERVNVTVRTGVSMVVGGSCAPCTQLLVSSIGVVGTAEQNKEHSAKFFQFLTENMGLEQDRILLRFVPLEPWQVG 109          
The following BLAST results are available for this feature:
BLAST of DN617738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MIF_RAT3.207e-2142.11Macrophage migration inhibitory factor OS=Rattus n... [more]
MIF_MOUSE7.144e-2141.23Macrophage migration inhibitory factor OS=Mus musc... [more]
MIF_MACMU7.144e-2141.23Macrophage migration inhibitory factor OS=Macaca m... [more]
MIF_MACFA7.144e-2141.23Macrophage migration inhibitory factor OS=Macaca f... [more]
MIF_HUMAN7.144e-2141.23Macrophage migration inhibitory factor OS=Homo sap... [more]
MIF_MERUN9.330e-2141.23Macrophage migration inhibitory factor OS=Meriones... [more]
MIF2_CAEEL7.393e-1837.17MIF-like protein mif-2 OS=Caenorhabditis elegans G... [more]
DOPDB_XENLA2.629e-1535.40D-dopachrome decarboxylase-B OS=Xenopus laevis GN=... [more]
DOPDA_XENLA2.226e-1434.51D-dopachrome decarboxylase-A OS=Xenopus laevis GN=... [more]
DOPD_XENTR9.352e-1333.94D-dopachrome decarboxylase OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617738 ID=DN617738; Name=DN617738; organism=Citrus sinensis; type=EST; length=548bp
CCTTTTTTTTCCGAAAAAAAATTATATTATCACACGAATTGGAATATAAA
ACAGATTAAAATAATGGATTATTTTAATCCATCTCTCTGATACAAAATAA
TAAGATCAGCTTGTTATTCGAAAAAGTCTCGCATTCATCATACCGCTCGT
TGAAATTCGCCTCTTATTAATCTTGCTAGTTGTCGCCAAGCATTGGATGA
AACGTCGAACCGTTATATCCTACGGTAGATGGTGCAGCATCAACGAATTG
AATGTACAACCTATCCTTTGGAATTCCCAAATTTTTCGAGACGTGATCGT
AAATAGCTTTGGCATGTTTTTTGTTCGGTTCGATGCCAAGTTTTCCTATG
CTCATCAAAGTAGCATTGCCAGCTGGATCACTGGATCCACCAAATATGAG
AGCTTGATCAGGATTCACATGCACTGCAACGTAGCTCTCCGGTTTACCCA
AAGTATTAGCAATTAGTTTTGAAGTCGATTTCAAAAAATCGGCTGGTATT
TTATCTTTTGAAATGTTGGTATCCAACTTGAAAAACGGCATTATTTCA
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