DN617738

Overview
NameDN617738
Unique NameDN617738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DOPD_HUMAN (D-dopachrome decarboxylase OS=Homo sapiens GN=DDT PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  206 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGS 541
            MPF +LDTN+  +++PA   K      A+ LGKP   V V V P  A+   GS++P    ++ SIG +G  E N+ H+   ++ ++K L + +DR+ I+F       +G  G+
Sbjct:    1 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGT 113          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DOPD_RAT (D-dopachrome decarboxylase OS=Rattus norvegicus GN=Ddt PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 35/113 (30.97%), Postives = 60/113 (53.10%), Query Frame = -2
Query:  206 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGS 541
            MPF +L+TN+   +IPA          A  L KPE  V+V + P   L+   S++P  +  + SIG +G  E N+ H+ + +  +++ L + +DR+ I+F    P  +G  G+
Sbjct:    1 MPFVELETNLPASRIPAGLENRLCAATATILDKPEDRVSVTIRPGMTLLMNKSTEPCAHLLISSIGVVGTAEQNRSHSSSFFKFLTEELSLDQDRIIIRFFPLEPWQIGKKGT 113          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DDTL_HUMAN (D-dopachrome decarboxylase-like protein OS=Homo sapiens GN=DDTL PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = -2
Query:  260 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDR 541
            MPF +LDTN+  +++PA   K      A+ LGKP   V V V P  A+   GS++P    ++ SIG +G  E N+ H+   ++ ++K L + +DR
Sbjct:    1 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDR 95          
BLAST of DN617738 vs. ExPASy Swiss-Prot
Match: DOPD_BOVIN (D-dopachrome decarboxylase OS=Bos taurus GN=DDT PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 36/113 (31.86%), Postives = 60/113 (53.10%), Query Frame = -2
Query:  206 MPFFKLDTNISKDKIPADFLKSTSKLIANTLGKPESYVAVHVNPDQALIFGGSSDPAGNATLMSIGKLG-IEPNKKHAKAIYDHVSKNLGIPKDRLYIQFVDAAPSTVGYNGS 541
            MPF +LDT++   ++PA   K      A  L KPE  V V V    A++  GS++P+    + SIG +G  E N+ H+   ++ ++K L + +DR+ I+F       +G  G+
Sbjct:    1 MPFVELDTSLPAGRVPAGLEKRLCAATAAILSKPEDRVNVTVRSGLAMVVNGSAEPSAQLLVSSIGVVGTAEENRGHSARFFEFLTKELDLAEDRIMIRFFPLERWQIGKKGT 113          
The following BLAST results are available for this feature:
BLAST of DN617738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DOPD_HUMAN9.352e-1333.63D-dopachrome decarboxylase OS=Homo sapiens GN=DDT ... [more]
DOPD_RAT6.062e-1230.97D-dopachrome decarboxylase OS=Rattus norvegicus GN... [more]
DDTL_HUMAN3.929e-1135.79D-dopachrome decarboxylase-like protein OS=Homo sa... [more]
DOPD_BOVIN8.753e-1131.86D-dopachrome decarboxylase OS=Bos taurus GN=DDT PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617738 ID=DN617738; Name=DN617738; organism=Citrus sinensis; type=EST; length=548bp
CCTTTTTTTTCCGAAAAAAAATTATATTATCACACGAATTGGAATATAAA
ACAGATTAAAATAATGGATTATTTTAATCCATCTCTCTGATACAAAATAA
TAAGATCAGCTTGTTATTCGAAAAAGTCTCGCATTCATCATACCGCTCGT
TGAAATTCGCCTCTTATTAATCTTGCTAGTTGTCGCCAAGCATTGGATGA
AACGTCGAACCGTTATATCCTACGGTAGATGGTGCAGCATCAACGAATTG
AATGTACAACCTATCCTTTGGAATTCCCAAATTTTTCGAGACGTGATCGT
AAATAGCTTTGGCATGTTTTTTGTTCGGTTCGATGCCAAGTTTTCCTATG
CTCATCAAAGTAGCATTGCCAGCTGGATCACTGGATCCACCAAATATGAG
AGCTTGATCAGGATTCACATGCACTGCAACGTAGCTCTCCGGTTTACCCA
AAGTATTAGCAATTAGTTTTGAAGTCGATTTCAAAAAATCGGCTGGTATT
TTATCTTTTGAAATGTTGGTATCCAACTTGAAAAACGGCATTATTTCA
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