DN617733

Overview
NameDN617733
Unique NameDN617733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617733 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  102 YDRQLRIWGEQGQSALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 545
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E+ +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSGFQVVVLTNSPLEEQLRVGEFCHSRGIKLVVADTRGLFG 196          
BLAST of DN617733 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  102 YDRQLRIWGEQGQSALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 545
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSSFQVVVLTNSPLEAQLRVGEFCHSRGIKLVVADTRGLFG 196          
BLAST of DN617733 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  102 YDRQLRIWGEQGQSALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 545
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VSAYTGPLVE---DFLSDFQVVVLTNSPLEDQLRVGEFCHSHGIKLVVADTRGLFG 196          
BLAST of DN617733 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.785e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  102 YDRQLRIWGEQGQSALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 545
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSGFQVVVLTNTPLEDQLRVGEFCHNRGIKLVVADTRGLFG 196          
BLAST of DN617733 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  102 YDRQLRIWGEQGQSALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 545
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSGFQVVVLTNSPLEDQLRVGEFCHSRGIKLVVADTRGLFG 196          
BLAST of DN617733 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  102 YDRQLRIWGEQGQSALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 545
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   LIE    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   54 YSRQLYVLGHEAMKHLQASSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGIAQWADLSSQFCLREEDIGKNRAEISQPRLAELNSYVP---VFAYTGPLIE---EFLSGFQVVVLTNTPLEYQLQVGEFCHSHGIKLVVADTRGLVG 195          
The following BLAST results are available for this feature:
BLAST of DN617733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
UBA1_RAT2.898e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE2.898e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_BOVIN2.898e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_HUMAN3.785e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RABIT4.944e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1Y_MOUSE1.101e-1131.08Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617733 ID=DN617733; Name=DN617733; organism=Citrus sinensis; type=EST; length=642bp
ATCTCATTTTACTGTGGCCACGAAATAGAAAAACGAAATTTTAAAAAAAG
AAAAAAGAAAAAAACACACGAACAGCAGCAATGGCGGAACCAAAAACCAA
ATACGACCGCCAGCTCAGGATCTGGGGTGAGCAAGGGCAATCAGCTCTTG
AAAAGGCAAGTGTATGCTTGCTCAACTGTGGTCCTACAGGTTCCGAGACT
TTGAAAAATCTGGTTCTTGGCGGGATTGGAAGCATTACAGTAATTGATGG
GTCTAAAGTTGAAGTGGGTGACCTTGGAAACAATTTTATGTTGGATGAGT
CATGTGTTGGGGAATCAAAAGCCAAGTCTGTGTGTGCATTTCTTCAAGAG
CTCAACGATGCTGTTAAAGCCAAGTTTATTGAGGAGTATCCTGAGGCACT
GATTGAAATGAACCCTCCCTTCTTCTCTCAGTTTACTTTGGTTGTGGCCA
CACAGCTGGGAGAAGAAAAAATGATAAAGCTTGATAGAATCTGTAGAGAG
GCAAATGTGATGTTGATTTTTGCTCGCTCTTATGGCCTCACTGGGTTTGT
TCGAATCAGTGTGAAGGAACATACAGTGGTTGAGTCAAAGCCTGATCATT
TTCTGGATGACCTTCGATTAAATAACCCATGGCCTGAGCTAA
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