DN617731

Overview
NameDN617731
Unique NameDN617731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617731_ssr167 microsatellite DN617731_ssr167:167..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5746 contig Csv1_Contig5746:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL1_DICDI (Beta-galactosidase 1 OS=Dictyostelium discoideum GN=glb1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.466e-42
Identity = 80/153 (52.29%), Postives = 101/153 (66.01%), Query Frame = 3
Query:  264 FQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            +QII G  HYFR LP+ W DRL + KA GLNTIQTY+PWN+H+P           DL+ FL+  Q++ L V+LRPGPY CAEW+LGGF             RSSD  ++  V  +W  LLP + PLL+  GGPI+MVQ+ENE+GSYG+DK YL
Sbjct:   60 YQIISGSFHYFRCLPELWVDRLTKMKACGLNTIQTYIPWNVHQPNGFNTELVATNDLIEFLRQAQQIGLNVILRPGPYSCAEWELGGF-PYWILEQQPIALRSSDSVFISAVIAYWSRLLPLLEPLLFTNGGPIIMVQVENEYGSYGEDKSYL 211          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLB1L_MACFA (Beta-galactosidase-1-like protein OS=Macaca fascicularis GN=GLB1L PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.137e-40
Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  231 EDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG 704
            + D F  DG PF+ + G LHYFR+    W DRLL+ +  GLN IQ YVPWN HEP+PG   F+G  DL++FL      +LLV+LRPGPYICAEW++GG              R+SD  +L  V+ W+ VLLPKI P LY  GG I+ +Q+ENE+GSYG
Sbjct:   35 DHDRFLLDGAPFRYVSGSLHYFRVPRVLWADRLLKMRWSGLNAIQFYVPWNYHEPQPGVYNFNGSRDLIAFLNEAALANLLVILRPGPYICAEWEMGGL-PSWLLRKPEIRLRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSYG 191          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLBL3_RAT (Beta-galactosidase-1-like protein 3 OS=Rattus norvegicus GN=Glb1l3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39
Identity = 74/160 (46.25%), Postives = 110/160 (68.75%), Query Frame = 3
Query:  243 FRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            F  +G  F I+GG +HYFR+  ++W+DRLL+ +A G NT+ TY+PWNLHE + GK  FS I DL +++ L + L L V+LRPGPYICAE DLGG              R++++ +++ V++++  L+PKI PL Y  GGP++ VQ+ENE+GS+ +DK Y+
Sbjct:   56 FTLEGHKFMIVGGSIHYFRVPREYWKDRLLKLQACGFNTVTTYIPWNLHEQERGKFDFSEILDLEAYVLLAKTLGLWVILRPGPYICAEVDLGGL-PSWLLRNPGSNLRTTNKDFIEAVDKYFDHLIPKILPLQYRRGGPVIAVQVENEYGSFRNDKNYM 214          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLBL2_MOUSE (Beta-galactosidase-1-like protein 2 OS=Mus musculus GN=Glb1l2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39
Identity = 80/170 (47.06%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  213 GRKFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            G  F +ED +F       QI+GG +HYFR+  ++W DRLL+ KA GLNT+ TYVPWNLHEP+ GK  FSG  DL +F++L  K+ L V+LRPGPYIC+E DLGG              R++   + + VE ++  L+ ++ PL Y  GGPI+ VQ+ENE+GSY  D+ Y+
Sbjct:   51 GPDFILEDSIF-------QILGGSIHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSGNLDLEAFIQLAAKIGLWVILRPGPYICSEIDLGGL-PSWLLQDPDMKLRTTYHGFTKAVELYFDHLMSRVVPLQYKHGGPIIAVQVENEYGSYNKDRAYM 212          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLB1L_HUMAN (Beta-galactosidase-1-like protein OS=Homo sapiens GN=GLB1L PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.033e-39
Identity = 79/155 (50.97%), Postives = 100/155 (64.52%), Query Frame = 3
Query:  237 DMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 701
            D F  DG PF+ + G LHYFR+    W DRLL+ +  GLN IQ YVPWN HEP+PG   F+G  DL++FL      +LLV+LRPGPYICAEW++GG              R+SD  +L  V+ W+ VLLPKI P LY  GG I+ +Q+ENE+GSY
Sbjct:   37 DRFLLDGAPFRYVSGSLHYFRVPRVLWADRLLKMRWSGLNAIQFYVPWNYHEPQPGVYNFNGSRDLIAFLNEAALANLLVILRPGPYICAEWEMGGL-PSWLLRKPEIHLRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSY 190          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLBL3_MOUSE (Beta-galactosidase-1-like protein 3 OS=Mus musculus GN=Glb1l3 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.530e-39
Identity = 72/161 (44.72%), Postives = 110/161 (68.32%), Query Frame = 3
Query:  243 FRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLH 725
            F  +G  F I+GG +HYFR+  ++W+DRLL+ +A G NT+ TY+PWNLHE + GK  FS I DL +++ L + + L V+LRPGPYICAE DLGG              R++++ +++ V++++  L+PKI PL Y  GGP++ VQ+ENE+GS+  D+ Y++
Sbjct:   56 FTLEGHKFMIVGGSIHYFRVPREYWKDRLLKLQACGFNTVTTYIPWNLHEQERGKFDFSEILDLEAYVLLAKTIGLWVILRPGPYICAEVDLGGL-PSWLLRNPVTDLRTTNKGFIEAVDKYFDHLIPKILPLQYRHGGPVIAVQVENEYGSFQKDRNYMN 215          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLBL3_HUMAN (Beta-galactosidase-1-like protein 3 OS=Homo sapiens GN=GLB1L3 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 72/160 (45.00%), Postives = 107/160 (66.88%), Query Frame = 3
Query:  243 FRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            F  +G  F I GG +HYFR+  ++W DRLL+ KA G NT+ TYVPWNLHEP+ GK  FSG  DL +F+ +  ++ L V+LRPG YIC+E DLGG              R++++++++ VE+++  L+P++ PL Y   GP++ VQ+ENE+GS+  DK Y+
Sbjct:   80 FTLEGHKFLIFGGSIHYFRVPREYWRDRLLKLKACGFNTVTTYVPWNLHEPERGKFDFSGNLDLEAFVLMAAEIGLWVILRPGRYICSEMDLGGL-PSWLLQDPRLLLRTTNKSFIEAVEKYFDHLIPRVIPLQYRQAGPVIAVQVENEYGSFNKDKTYM 238          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLBL2_HUMAN (Beta-galactosidase-1-like protein 2 OS=Homo sapiens GN=GLB1L2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.485e-37
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  243 FRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            F  +   F I GG +HYFR+  ++W DRLL+ KA GLNT+ TYVPWNLHEP+ GK  FSG  DL +F+ +  ++ L V+LRPGPYIC+E DLGG              R++ + + + V+ ++  L+ ++ PL Y  GGPI+ VQ+ENE+GSY  D  Y+
Sbjct:   54 FMLEDSTFWIFGGSIHYFRVPREYWRDRLLKMKACGLNTLTTYVPWNLHEPERGKFDFSGNLDLEAFVLMAAEIGLWVILRPGPYICSEMDLGGL-PSWLLQDPGMRLRTTYKGFTEAVDLYFDHLMSRVVPLQYKRGGPIIAVQVENEYGSYNKDPAYM 212          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_XANMN (Beta-galactosidase OS=Xanthomonas manihotis GN=bga PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 73/167 (43.71%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  222 FEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            F  +   F +DG+P+Q++ G +H+ RI   +W+DRL +A+ALGLNT++TYV WNL EP+ G+  FSG  D+ +F+K      L V+LRPGPY CAEW+ GG+             RS D  +L   + +   L  ++ PLL   GGPI+ VQ+ENE+GSY DD  Y+
Sbjct:   30 FGTQGTQFVRDGKPYQLLSGAIHFQRIPRAYWKDRLQKARALGLNTVETYVFWNLVEPQQGQFDFSGNNDVAAFVKEAAAQGLNVILRPGPYACAEWEAGGY-PAWLFGKGNIRVRSRDPRFLAASQAYLDALAKQVQPLLNHNGGPIIAVQVENEYGSYADDHAYM 195          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 3
Query:  252 DGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAP--LLYDIGGPIVMVQIENEFGS 698
            DG+   +  G +HY R  P+ W   + RAK  GLNTIQTYV WN+HEP+ GK  FSG ADLV F+KL QK  + V LR GP+I AEW  GG              R+ ++ + +  ER+  ++L K+    L    GGPI++ QIENE+ +
Sbjct:   51 DGKRELLYSGSIHYPRSTPEMWPSIIKRAKQGGLNTIQTYVFWNVHEPQQGKFNFSGRADLVKFIKLIQKNGMYVTLRLGPFIQAEWTHGGL-PYWLREVPGIFFRTDNKQFKEHTERYVRMILDKMKEERLFASQGGPIILGQIENEYSA 200          
The following BLAST results are available for this feature:
BLAST of DN617731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
BGAL1_DICDI7.466e-4252.29Beta-galactosidase 1 OS=Dictyostelium discoideum G... [more]
GLB1L_MACFA3.137e-4050.63Beta-galactosidase-1-like protein OS=Macaca fascic... [more]
GLBL3_RAT1.557e-3946.25Beta-galactosidase-1-like protein 3 OS=Rattus norv... [more]
GLBL2_MOUSE1.557e-3947.06Beta-galactosidase-1-like protein 2 OS=Mus musculu... [more]
GLB1L_HUMAN2.033e-3950.97Beta-galactosidase-1-like protein OS=Homo sapiens ... [more]
GLBL3_MOUSE4.530e-3944.72Beta-galactosidase-1-like protein 3 OS=Mus musculu... [more]
GLBL3_HUMAN1.318e-3845.00Beta-galactosidase-1-like protein 3 OS=Homo sapien... [more]
GLBL2_HUMAN2.485e-3745.63Beta-galactosidase-1-like protein 2 OS=Homo sapien... [more]
BGAL_XANMN1.364e-3543.71Beta-galactosidase OS=Xanthomonas manihotis GN=bga... [more]
BGA11_ARATH2.850e-2543.05Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617731 ID=DN617731; Name=DN617731; organism=Citrus sinensis; type=EST; length=726bp
GAGAGTCAACGACGACGATGACAGTCAAACGCGCGATGGCGACAATGCGA
AGGCGGAGCACCGCCACCACCAATACGACGTTGTTCCTCACCGTTTTGAT
ATCGCTCTTGGCCTTTCTTGGCTTCGTCCCTGTCTTCGCTCCCCTCCCTT
CTCTCGCCTTCCGCAATCCTCCTCCTCCTCCTCACCACCGTCATCGCCAC
AATAACGTGAATGGTCGAAAGTTTGAGATTGAGGATGACATGTTCCGGAA
AGATGGTGAGCCATTTCAGATTATTGGTGGTGACCTGCATTATTTCCGCA
TTCTCCCTCAGCACTGGGAAGATAGGCTTTTGCGAGCAAAGGCTTTAGGC
TTGAATACCATTCAAACTTATGTTCCTTGGAATCTGCATGAACCAAAACC
TGGCAAGCTGGTTTTTAGTGGCATTGCAGATCTTGTTTCATTTCTTAAAC
TTTGTCAGAAGCTGGATTTGCTTGTTATGCTTCGACCTGGGCCTTATATA
TGTGCAGAGTGGGATTTGGGGGGTTTCCCTGCTTGGTTACTTGCCAAAAA
GCCGGCTCTCAAGCTAAGGTCATCTGATCGTGCTTACCTTCAGTTGGTTG
AAAGATGGTGGGGAGTCCTACTTCCGAAAATAGCTCCTCTGCTTTATGAC
ATTGGAGGCCCAATTGTAATGGTTCAGATTGAAAATGAATTTGGTTCGTA
TGGAGATGACAAAGAGTATCTTCATC
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