FC921915

Overview
NameFC921915
Unique NameFC921915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length198
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.169e-21
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.169e-21
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.057e-21
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.057e-21
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
The following BLAST results are available for this feature:
BLAST of FC921915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_GEOCY6.169e-2192.45Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL6.169e-2192.45Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_AGLNE8.057e-2192.45Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_ACECL8.057e-2190.57Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_XENLA1.052e-2092.45Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_TRYCR1.052e-2092.45Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SPOFR1.052e-2092.45Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SHEEP1.052e-2092.45Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_RAT1.052e-2092.45Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT1.052e-2092.45Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06053H05T7 RindPdigS Citrus sinensis cDNA clone C06053H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921915 ID=FC921915; Name=FC921915; organism=Citrus sinensis; type=EST; length=198bp
CGCCCGTGCCGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGACCTTC
GAGAAAACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGA
CACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCC
CGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGTC
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