FC921915

Overview
NameFC921915
Unique NameFC921915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length198
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
The following BLAST results are available for this feature:
BLAST of FC921915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_PONPY1.052e-2092.45Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY1.052e-2092.45Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG1.052e-2092.45Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR1.052e-2092.45Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA1.052e-2092.45Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE1.052e-2092.45Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE1.052e-2092.45Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA1.052e-2092.45Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU1.052e-2092.45Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN1.052e-2092.45Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC06053H05T7 RindPdigS Citrus sinensis cDNA clone C06053H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921915 ID=FC921915; Name=FC921915; organism=Citrus sinensis; type=EST; length=198bp
CGCCCGTGCCGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGACCTTC
GAGAAAACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGA
CACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCC
CGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGTC
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