FC921915

Overview
NameFC921915
Unique NameFC921915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length198
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
The following BLAST results are available for this feature:
BLAST of FC921915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_HORSE1.052e-2092.45Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO1.052e-2092.45Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA1.052e-2092.45Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME1.052e-2092.45Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR1.052e-2092.45Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK1.052e-2092.45Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA1.052e-2092.45Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO1.052e-2092.45Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA1.052e-2092.45Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR1.052e-2092.45Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC06053H05T7 RindPdigS Citrus sinensis cDNA clone C06053H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921915 ID=FC921915; Name=FC921915; organism=Citrus sinensis; type=EST; length=198bp
CGCCCGTGCCGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGACCTTC
GAGAAAACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGA
CACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCC
CGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGTC
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