FC921915

Overview
NameFC921915
Unique NameFC921915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length198
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 3
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+G
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEG 53          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-18
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 3
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            MQ F KTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+G
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEG 53          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   72 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 197
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 42          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.628e-15
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 3
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            MQ F KTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLED 52          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.282e-14
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   39 MQTFEKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            MQ F KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLED 52          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLAD 52          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD 52          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD 52          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD 52          
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 3
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD 52          
The following BLAST results are available for this feature:
BLAST of FC921915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
UBIQ_LEIMA1.163e-1988.68Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA3.742e-1884.91Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.019e-1595.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVOP8.628e-1573.08Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC4.282e-1471.15Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN6.836e-1265.96NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ8.928e-1263.83NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB2_ARATH8.928e-1263.83NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
RUB1_ORYSJ8.928e-1263.83NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH8.928e-1263.83NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06053H05T7 RindPdigS Citrus sinensis cDNA clone C06053H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921915 ID=FC921915; Name=FC921915; organism=Citrus sinensis; type=EST; length=198bp
CGCCCGTGCCGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGACCTTC
GAGAAAACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGA
CACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCC
CGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGTC
back to top