FC921915

Overview
NameFC921915
Unique NameFC921915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length198
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.523e-11
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D
Sbjct:    6 KTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMND 52
[Close]
BLAST of FC921915 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.393e-11
Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:   54 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 194
            KTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct:    6 KTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMND 52
The following BLAST results are available for this feature:
BLAST of FC921915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
NEDD8_CAEEL1.523e-1161.70NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
NEDD8_DROME3.393e-1157.45NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC06053H05T7 RindPdigS Citrus sinensis cDNA clone C06053H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921915 ID=FC921915; Name=FC921915; organism=Citrus sinensis; type=EST; length=198bp
CGCCCGTGCCGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGACCTTC
GAGAAAACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGA
CACCATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCC
CGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGTC
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