DN617725

Overview
NameDN617725
Unique NameDN617725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617725_ssr662 microsatellite DN617725_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:22..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.197e-35
Identity = 65/101 (64.36%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            VTD+T++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+++QY GK+K  KVNTDE+P +A++YGIRSIPT+MIFK G+K D V+GAVPK+TL+ ++EK L
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.197e-35
Identity = 65/101 (64.36%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            VTD+T++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+++QY GK+K  KVNTDE+P +A++YGIRSIPT+MIFK G+K D V+GAVPK+TL+ ++EK L
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35
Identity = 64/103 (62.14%), Postives = 89/103 (86.41%), Query Frame = 2
Query:  302 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            P V+DA+++  VLDS  PVLV+FWAPWCGPCRM+ P++DE+S+QY GK+K  K+NTDE+P+ A++YGIRSIPT+MIFK G++ D V+GAVPK+TL +++EK+L
Sbjct:    5 PQVSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35
Identity = 64/102 (62.75%), Postives = 89/102 (87.25%), Query Frame = 2
Query:  305 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            AVTDAT++  VL+S  PVLV+FWAPWCGPCRM+ P++DE+++QY  ++K  KVNTDE+PS+A++YGIRSIPT+MIFK+G++ DTV+GAVPK+TL  +++K L
Sbjct:    6 AVTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.463e-33
Identity = 60/106 (56.60%), Postives = 87/106 (82.08%), Query Frame = 2
Query:  293 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            + V  VTDA+++  V+++  PVLV+FWAPWCGPCRM+ P++DE++++Y   +K  K+NTD++P+IA  YGIRSIPT+MIFK GE+ DTVIGAVPKSTL +++ K++
Sbjct:    1 MSVSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYI 106          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 63/101 (62.38%), Postives = 87/101 (86.14%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            VTD +++  V++S   VLV+FWAPWCGPCRMI P+IDEL+++YV ++K  K+NTDE+PSI+  YGIRSIPT+M+FK+G++ DTVIGAVPKSTLT +++K+L
Sbjct:    7 VTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33
Identity = 59/106 (55.66%), Postives = 87/106 (82.08%), Query Frame = 2
Query:  293 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            + V  VTDA+++  V+++  PVLV+FWAPWCGPCRM+ P++D ++++Y   +K  K+NTD++P+IA  YGIRSIPT+MIFK+GE+ DTVIGAVPKSTL +++ K++
Sbjct:    1 MSVSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYI 106          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.336e-31
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  293 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            + +  V D ++   V++S  PVLV+FWAPWCGPCRMI   IDE++  Y  KLK  KVNTD++P+IAT YGIRSIPTVMIF NG+K DTV+GAVPK TL  +++K L
Sbjct:    1 MSISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 604
            VTD++++  VL+S  PVLV+FWA WCGPC+M+ PIIDE+SK+  GK+K  K+N DE+P+I + YGIRSIPT+M+FKNGE+KDT IG   K++L   I K
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINK 103          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.309e-29
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            + + T+++ VL S   VLV+FWAPWCGPCRMI PI++E++K++   LK  +VNTDE+P++AT YGIRSIPT+M+FK G++ DTVIGAVPKS L  +I K+L
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF--NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
The following BLAST results are available for this feature:
BLAST of DN617725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO1_ANASP1.197e-3564.36Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO1.197e-3564.36Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_SYNY32.667e-3562.14Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO1_SYNE72.667e-3562.75Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_PORYE1.463e-3356.60Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_CYACA1.911e-3362.38Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_PORPU5.560e-3355.66Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO_GRIPA2.336e-3159.43Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO_RICFE6.362e-2958.59Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO_CYAME8.309e-2958.42Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617725 ID=DN617725; Name=DN617725; organism=Citrus sinensis; type=EST; length=674bp
CTCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCTCTGTTC
CGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCGGCTTCT
TCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAATTCGAT
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGC
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