DN617725

Overview
NameDN617725
Unique NameDN617725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617725_ssr662 microsatellite DN617725_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:22..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 27/76 (35.53%), Postives = 51/76 (67.11%), Query Frame = 2
Query:  341 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 568
            DSG  ++++F A WCGPCR+I P + EL+K++   +  +KV+ D+   +A  Y + ++P+ +I K G++ + ++GA
Sbjct:   25 DSGKLIVIDFTASWCGPCRVITPYVSELAKKF-PHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGA 99          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  323 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 574
            + S +      V+V+F+A WCGPC+MI P+I++ ++QY      YK++ DE   +A +  + S+PT++ +K G++   V+GA P
Sbjct:   11 YDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 93          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  299 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK--LKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 559
            V  V   T+ S+V+D    VL+EF+APWCG C+ + P+ + L+K+Y G+  L   K++   +   + RY +   PT+    +G+KK+ V
Sbjct:  527 VKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKKNPV 615          
The following BLAST results are available for this feature:
BLAST of DN617725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TRXH_FAGES4.580e-1135.53Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRX2_YEAST4.580e-1135.71Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
PDIA4_HUMAN7.813e-1134.83Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617725 ID=DN617725; Name=DN617725; organism=Citrus sinensis; type=EST; length=674bp
CTCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCTCTGTTC
CGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCGGCTTCT
TCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAATTCGAT
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGC
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