DN617725

Overview
NameDN617725
Unique NameDN617725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617725_ssr662 microsatellite DN617725_ssr662:662..673. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:22..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 604
            V D++++  VL+S  PVLV+FWA WCGPC+M+ PIIDE+SK+  GK+K  K+N DE+P+  + YGIRSIPT+M+FKNGE+KDT IG   K++L   I K
Sbjct:    5 VMDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINK 103          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.491e-27
Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 604
            VTD+++++ VL+S  PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YGIRSIPT+M+FKNGE+KDT IG   K++L   I K
Sbjct:    5 VTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINK 103          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 604
            VTD ++++ VL+S  PV+V+FWA WCGPC+M+ PIIDE+SK+   K+K  K+N DE+P   + YG+RSIPT+M+FKNGE+KDT IG   K +L   I K
Sbjct:    5 VTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQKDTKIGLQQKKSLLDWINK 103          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_STRAU (Thioredoxin (Fragment) OS=Streptomyces aureofaciens GN=trxA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.732e-26
Identity = 52/101 (51.49%), Postives = 76/101 (75.25%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            VT+AT++S VL+S  PVLV F  PWCGPC+M+ P++DE++ +Y GK+K  KVNTDE+P +A++YG+RSIPT ++FK GE    ++GA PK+ L   ++  L
Sbjct:    6 VTNATFKSDVLESDKPVLVHFEGPWCGPCKMVAPVLDEIANEYEGKVKVAKVNTDENPQLASQYGVRSIPTRLMFKGGEVAANMVGAAPKTRLAAFLDASL 106          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  269 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            +C     A EV   T  +W+  VL S +PVLVEF+  WCGPCRM+H IIDE++  Y GKL CY +N D    +A  Y I+++P V++FKNGEK+++++G +PK    ++IE+ L
Sbjct:   61 LCVRDSRAAEV---TQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 171          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 586
            VTD +++  VL S  PVLV+FWA WC PCRM+ PII+E+SK    K+K  K+N DE+P I ++YGIRSIPTVM+FKNGE+KDT +G   K++L
Sbjct:    5 VTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQKDTKVGLHQKNSL 97          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 51/104 (49.04%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  293 VEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 604
            +EV   TDAT+ + V++S  PVL++FWAPWCGPCRMI PI+DE++ ++ GK+K  K+N DE+ +   + G+RSIPT+++FKNG+   T +GA+PK+ L   I +
Sbjct:    1 MEVLHSTDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGKAVATQVGALPKNQLANFINQ 104          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.267e-25
Identity = 46/105 (43.81%), Postives = 78/105 (74.29%), Query Frame = 2
Query:  296 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            EV  + DA ++S+V++S  P+L++FWAPWCGPC+MI P++DEL+ ++ GK+K  K+N D++ +   ++G+RSIPT+++ KNG+   T +GA+PK+ L   I + +
Sbjct:    3 EVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVVATQVGALPKTQLANFINQHI 107          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  308 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            VTDAT+ + V  S  PV+V+FWA WCGPCR I P ++ELSK+Y GK+K  KVN DE+P      G+R IP + +FKNG+     +GA PK+ L T I   L
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVVSNKVGAAPKAALATWIASAL 106          
BLAST of DN617725 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 111.309 bits (277), Expect = 4.718e-24
Identity = 48/100 (48.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  311 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 610
            TD  +Q+ +LDS   VLV+FWA WCGPC M+ P+I++L+  Y GK    K+N DE+P+IA +YGIRSIPT++I K G+  D ++GA+PK+ +   I++ +
Sbjct:    8 TDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
The following BLAST results are available for this feature:
BLAST of DN617725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_RICCN1.200e-2756.57Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]
THIO_RICPR3.491e-2755.56Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_RICTY1.016e-2654.55Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO_STRAU1.732e-2651.49Thioredoxin (Fragment) OS=Streptomyces aureofacien... [more]
TRXM3_ARATH2.263e-2645.61Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
THIO_RICBR2.955e-2658.06Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO_PASMU2.502e-2549.04Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO_HAEIN4.267e-2543.81Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO_RHOSH4.718e-2450.50Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_CHLLT4.718e-2448.00Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617725 ID=DN617725; Name=DN617725; organism=Citrus sinensis; type=EST; length=674bp
CTCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCTCTGTTC
CGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCGGCTTCT
TCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAATTCGAT
CTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTG
TTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTC
CGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGT
GCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGAT
CACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATG
ATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAAGCTAAA
ATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATG
GAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAA
GATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAGCATAGA
GAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAAACAGGC
TCTCTGTAGCATTTGTTTGTTTGC
back to top