DN617724

Overview
NameDN617724
Unique NameDN617724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617724_ssr56 microsatellite DN617724_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:276..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 27/76 (35.53%), Postives = 51/76 (67.11%), Query Frame = -3
Query:  161 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 388
            DSG  ++++F A WCGPCR+I P + EL+K++   +  +KV+ D+   +A  Y + ++P+ +I K G++ + ++GA
Sbjct:   25 DSGKLIVIDFTASWCGPCRVITPYVSELAKKF-PHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGA 99          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = -3
Query:  155 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 406
            + S +      V+V+F+A WCGPC+MI P+I++ ++QY      YK++ DE   +A +  + S+PT++ +K G++   V+GA P
Sbjct:   11 YDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 93          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: PDIA4_HUMAN (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  170 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGK--LKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 430
            V  V   T+ S+V+D    VL+EF+APWCG C+ + P+ + L+K+Y G+  L   K++   +   + RY +   PT+    +G+KK+ V
Sbjct:  527 VKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKKNPV 615          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 30/83 (36.14%), Postives = 56/83 (67.47%), Query Frame = -3
Query:  122 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 370
            +V+F+A WCGPC+ + P +++LS+Q   K     VN D+   IA + G+ ++PT+++F+ G++ D ++GA  K TL++ + K+
Sbjct:   39 VVDFYADWCGPCKYLKPFLEKLSEQN-QKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVK-TLSSLLAKY 119          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 30/88 (34.09%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  125 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 388
            +S   ++++F A WC PCR I P+  +L+K+++  +  +KV+ DE  ++A  + ++++PT +  K GE K+TV+GA  K  +  ++EK
Sbjct:   25 ESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVV-FFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAA-KEEIIANLEK 110          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: PDI2_DICDI (Protein disulfide-isomerase 2 OS=Dictyostelium discoideum GN=pdi2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  170 EAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSK--QYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTV 454
            E +     V      T++ LVLDS   VLVEF+APWCG C+ + PI D+L +  + V  +   K++ D S  + +   IR  PT+M+FK  +K++ +
Sbjct:  370 EPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDAD-SNDVPSDIEIRGYPTIMLFKADDKENPI 465          
The following BLAST results are available for this feature:
BLAST of DN617724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TRXH_FAGES2.115e-1135.53Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRX2_YEAST2.115e-1135.71Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
PDIA4_HUMAN3.608e-1134.83Protein disulfide-isomerase A4 OS=Homo sapiens GN=... [more]
TRX2_SCHPO6.154e-1136.14Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TRXH3_ARATH8.037e-1134.09Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
PDI2_DICDI8.037e-1136.08Protein disulfide-isomerase 2 OS=Dictyostelium dis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617724 ID=DN617724; Name=DN617724; organism=Citrus sinensis; type=EST; length=474bp
TAATTTGATTGTGGAAAGCAAAGTATCTTAACCCAAGGCATAGTAAGCTA
CAAGGCAAACAAACAAATGCTACAGAGAGCCTGTTTCTAGCAAACGCGTC
CTTTACTTACCATGTCTACAAGAATTTCTCTATGCTGGTGGTCAAAGTGG
ATTTAGGAACAGCACCAATCACTGTATCTTTCTTCTCGCCATTCTTAAAT
ATCATGACAGTTGGGATGCTCCTAATTCCATATCTAGTAGCAATTGAAGG
ACTCTCATCAGTATTAACCTTATAGCATTTTAGCTTCCCCACATATTGCT
TTGATAGCTCATCAATAATAGGGTGGATCATCCGGCAAGGCCCGCACCAT
GGAGCCCAGAATTCAACAAGCACAGGTGATCCAGAGTCAAGAACAAGTGA
TTGCCATGTTGCATCTGTCACAGCAGGCACTTCAACGGCAGTTTCTTGAG
CCTCGCACACGATTTGCGCACCGC
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