DN617724

Overview
NameDN617724
Unique NameDN617724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617724_ssr56 microsatellite DN617724_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:276..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.119e-20
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  119 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 370
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.119e-20
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  119 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 370
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.493e-20
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  119 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 370
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   IEK L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = -3
Query:  173 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 421
            VTD +++  VL S  PVLV++WA WCGPC+MI P++DE++ +Y G++K  K+N DE+P+   RYGIR IPT+M+ +  E + T
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSEVEAT 90          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 42/93 (45.16%), Postives = 68/93 (73.12%), Query Frame = -3
Query:  143 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 421
            VTD T+++ VL S  PVLV+FWA WCGPCR I P ++ ++ ++ G+++  K+N D++P+ A +YG+ SIPT+ +++ GE   T++GA PK+ L
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTIVGAKPKAAL 99          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.255e-20
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  128 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 421
            V+DA+++  VL +  P  V+FWA WCGPCR   P ++EL+     K+   K+N DE+P   ++YG+R IPT+MIFK+G+   T IGA+PK+ L   +E
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATKIGALPKTKLFEWVE 101          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 5.553e-20
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = -3
Query:  119 AVTDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 424
            A+  AT QS   + S   VL +FWAPWCGPC+MI P+++EL ++   KLK  K++ DE+   A +YG+ SIPT+++ K+GE  +T +G  PK  L   + K L
Sbjct:    2 AIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.237e-19
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  119 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 370
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.616e-19
Identity = 40/101 (39.60%), Postives = 67/101 (66.34%), Query Frame = -3
Query:  119 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 421
            +TD  ++  +L+S   VLV+FWA WC PC+++ PI+++++K+Y  KL   K+N D++P+ A +Y IR IP +++FKN E   T +GA+ K  L   +  +L
Sbjct:    8 LTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSELVGTKVGALSKVQLKDFLNLYL 108          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.599e-19
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = -3
Query:  125 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 421
            +TD  ++  VL+S S  LV+FWA WC PC+++ PI++E+SK+Y  K+   K+N +E+P+ A  Y IRSIPT+++F N E   T +GAV K  L   +++
Sbjct:    7 LTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVLATKVGAVSKLELKEFLDE 105          
The following BLAST results are available for this feature:
BLAST of DN617724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
THIO_HELPY1.119e-2050.00Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ1.119e-2050.00Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_STAS12.493e-2050.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_THIRO3.255e-2049.40Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_STRCL3.255e-2045.16Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_RHORU3.255e-2044.90Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_BACSU5.553e-2043.69Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_STAHJ1.237e-1947.62Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_BUCBP1.616e-1939.60Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_BUCAI3.599e-1943.43Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617724 ID=DN617724; Name=DN617724; organism=Citrus sinensis; type=EST; length=474bp
TAATTTGATTGTGGAAAGCAAAGTATCTTAACCCAAGGCATAGTAAGCTA
CAAGGCAAACAAACAAATGCTACAGAGAGCCTGTTTCTAGCAAACGCGTC
CTTTACTTACCATGTCTACAAGAATTTCTCTATGCTGGTGGTCAAAGTGG
ATTTAGGAACAGCACCAATCACTGTATCTTTCTTCTCGCCATTCTTAAAT
ATCATGACAGTTGGGATGCTCCTAATTCCATATCTAGTAGCAATTGAAGG
ACTCTCATCAGTATTAACCTTATAGCATTTTAGCTTCCCCACATATTGCT
TTGATAGCTCATCAATAATAGGGTGGATCATCCGGCAAGGCCCGCACCAT
GGAGCCCAGAATTCAACAAGCACAGGTGATCCAGAGTCAAGAACAAGTGA
TTGCCATGTTGCATCTGTCACAGCAGGCACTTCAACGGCAGTTTCTTGAG
CCTCGCACACGATTTGCGCACCGC
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