DN617724

Overview
NameDN617724
Unique NameDN617724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617724_ssr56 microsatellite DN617724_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:276..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.153e-15
Identity = 34/98 (34.69%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  119 ATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 412
            A +  ++  S  PVLV+F+A WCGPC+M+ PI++++      +++  K++TD+ P+IAT+Y I+S+PT+++FK G+    + G    + L   ++ F+
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  119 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 430
            V  +TDA ++S VL +  PVLV FWA WCGPC+++ P+I+  +  Y  +LK  K+  D +P+   +Y +  +P + + K  +  D+  G + K  L + ++  L
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 108          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  119 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 421
            +TDA ++        PVLV FWA WCGPCR++ P I  ++K Y  KLK  K+  D +P+   +  +  +P + +FKN E   T  GA+ K  L   +++ L
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELVMTHEGAIAKPKLLELLKEEL 106          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 34/83 (40.96%), Postives = 57/83 (68.67%), Query Frame = -3
Query:  125 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 373
            VL++F+A WCGPC+M+ P+++ L  + V  +   KVN D+ P+ A +YG+ SIPT+++FK+G++ D V+G   K +L   I +
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLESLEAE-VSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQ 100          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.947e-14
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  119 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEK--KDTVIGAVPKSTLTTSIEKFL 430
            +  + ++ + S VL+S  PVLVEF A WCGPC++I+P ++ LS++Y  KL   K++ D +P +   + +  +P  ++FK+G++       GA+ K+ L   I+  L
Sbjct:   71 IKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLL 176          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  155 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 427
            P  + A ++  V D+  PV+V+F A WCGPC+ I P +++LS+ + G ++ YKV+ DE   +A   G+ ++PT   +K GE+ + V GA P
Sbjct:    5 PIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANP 94          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  119 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQY-VGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 388
            +SG  ++++FWA WCGPCR+I PI ++ S++Y    +   KV+ D +  I+    IR++PT  ++K+G+K D ++GA P + L + ++K L
Sbjct:   16 NSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANP-TALESLVQKSL 105          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -3
Query:  137 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 388
            DS   ++V+F+A WCGPCRMI P  + LS ++ G     KVNTD +  I  RY I ++PT + FKN ++ D+V GA   + ++T
Sbjct:   20 DSNRLIIVDFFANWCGPCRMISPAFERLSMEF-GNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIIST 102          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = -3
Query:  161 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 376
            P++V+F A WCGPC+MI P+ + LS  Y GK+   KV+ D   ++A   GI ++PT  ++K+G K D ++GA
Sbjct:   27 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA 98          
BLAST of DN617724 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.855e-13
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  155 PAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 427
            P  + A +Q  VL++   V+V+ +A WCGPC+ I P +++ ++ Y      Y+++ DE   +A   GIR++PT ++FK+G+K   V+GA P
Sbjct:    9 PITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDA-SFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANP 98          
The following BLAST results are available for this feature:
BLAST of DN617724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
THIO1_SYNY33.153e-1534.69Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO2_ANASP7.025e-1533.65Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO2_SYNY39.174e-1536.63Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_CHLCV2.669e-1440.96Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRXX_ARATH5.947e-1433.96Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO_PENCH1.014e-1338.46Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_COPCM1.014e-1337.36Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
NGLY1_CAEBR1.730e-1342.86Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXH_CHLRE2.951e-1343.06Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_EMENI3.855e-1336.26Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617724 ID=DN617724; Name=DN617724; organism=Citrus sinensis; type=EST; length=474bp
TAATTTGATTGTGGAAAGCAAAGTATCTTAACCCAAGGCATAGTAAGCTA
CAAGGCAAACAAACAAATGCTACAGAGAGCCTGTTTCTAGCAAACGCGTC
CTTTACTTACCATGTCTACAAGAATTTCTCTATGCTGGTGGTCAAAGTGG
ATTTAGGAACAGCACCAATCACTGTATCTTTCTTCTCGCCATTCTTAAAT
ATCATGACAGTTGGGATGCTCCTAATTCCATATCTAGTAGCAATTGAAGG
ACTCTCATCAGTATTAACCTTATAGCATTTTAGCTTCCCCACATATTGCT
TTGATAGCTCATCAATAATAGGGTGGATCATCCGGCAAGGCCCGCACCAT
GGAGCCCAGAATTCAACAAGCACAGGTGATCCAGAGTCAAGAACAAGTGA
TTGCCATGTTGCATCTGTCACAGCAGGCACTTCAACGGCAGTTTCTTGAG
CCTCGCACACGATTTGCGCACCGC
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