DN617723

Overview
NameDN617723
Unique NameDN617723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617723_ssr175 microsatellite DN617723_ssr175:175..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:31..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 65/228 (28.51%), Postives = 108/228 (47.37%), Query Frame = 1
Query:   19 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 684
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQ 207          
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 66/223 (29.60%), Postives = 105/223 (47.09%), Query Frame = 1
Query:   34 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 684
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQ 207          
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  202 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 684
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQ 207          
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  202 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 684
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++    T     S +++ +  N +IFI+ + HGG   L    +  I ++++ D  ++ +    Y  + F ++ C+
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLLTDRWTEDHPKSKRLL-TDENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMIDTCQ 200          
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  202 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 684
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQ 207          
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_CAEEL (Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 51/181 (28.18%), Postives = 92/181 (50.83%), Query Frame = 1
Query:  148 NGGGGAKVNDDDDSVG--TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEAC 681
            N G   K+++  D+ G    WAVL+  S  ++NYRH +++   Y  +++ G+ D NII+ + +D+  N  NPRPG +     G ++Y   V  DY GE+VTVE+F  V+ G     T  S +++ +    ++ I+ + HGG   +    S  +   +L   ++       Y  ++   ++C
Sbjct:   19 NTGLQLKIDELFDTPGHTNNWAVLVCTSKFWFNYRHVSNVLALYHSIKRLGIPDSNIIMMLAEDVPCNSRNPRPGTVYAARAGTNLYGSDVEVDYRGEEVTVESFIRVLTGRHHPATPRSKRLL-TDHQSNVLIYLTGHGGDSFMKFQDSEELTNVDLAYAIQTMFEDNRYHEMLVIADSC 198          
BLAST of DN617723 vs. ExPASy Swiss-Prot
Match: GPI8_SCHPO (GPI-anchor transamidase OS=Schizosaccharomyces pombe GN=gpi8 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 48/170 (28.24%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  181 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVII-NHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE 684
            + S    WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD A N  N  PG +  N     D+Y + +  DY G +VTVE F  ++       T  S +++ +    +I I+ + HGG G +    +  + +++L D +++ H    Y  ++F ++ C+
Sbjct:   20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLL-TNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQ 188          
The following BLAST results are available for this feature:
BLAST of DN617723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GPI8_PONAB3.279e-2028.51GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_HUMAN9.540e-2029.60GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN9.540e-2032.93GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_YEAST1.627e-1931.29GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_PIG6.183e-1932.93GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]
GPI8_CAEEL1.523e-1728.18Putative GPI-anchor transamidase OS=Caenorhabditis... [more]
GPI8_SCHPO5.787e-1728.24GPI-anchor transamidase OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617723 ID=DN617723; Name=DN617723; organism=Citrus sinensis; type=EST; length=686bp
ATCAACCCCCTTCAAAAAACCATGACGCGCCTTGCCTCCGGCGTGCTAAT
CACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAGAGACATAG
CAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTCCATAAT
GGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGGCACGAG
ATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACAGGCATC
AGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGGGCTGAAG
GATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCAATGAAGA
GAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGATGATGTTT
ACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTGTTGAAAAC
TTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGGGGGCAGTGG
GAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATTCTACTCAG
ATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATACATATAT
GCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTGGGAACTA
CAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATC
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