DN617710

Overview
NameDN617710
Unique NameDN617710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2418 contig Csv1_Contig2418:30..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617710 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 68/156 (43.59%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   57 SGQSICVTGAGGFIASWMVKLLLEKGYNVKGTVRNPDDPKNA-HLRELEGAKERLVLCKADLLDYESLKEAINGCEGVFHTASPV---TDDPE-QMVEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNTK 506
            S  ++CVTGA GFI SW+V  LLE+GY V  TVR+P D K   HL EL  A+  L L KADL    S  EAI GC GVFH A+P+   + DPE ++++P + G  +               FTSS G V  +       V DES WSDL+F  + K
Sbjct:    5 SPATVCVTGAAGFIGSWLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFTSSAGTV--NGQEKQLHVYDESHWSDLDFIYSKK 158          
BLAST of DN617710 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 67/168 (39.88%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   30 TVIDSSSQV---SGQSICVTGAGGFIASWMVKLLLEKGYNVKGTVRNPDDPKNA-HLRELEGAKERLVLCKADLLDYESLKEAINGCEGVFHTASPV---TDDPE-QMVEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNTK 506
            T +++SS+    S  ++CVTGA GFI SW+V  LLE+GY V+ TVR+P + K   HL EL  A   L L KAD+    S  EAI GCEGVFH A+ +   + DPE ++++P + G  N               FT+S G V ++ ++ P  V DE+  SD++F  + K
Sbjct:    4 TSLNTSSETAPPSSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKADTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDSVDPENEVIKPTIDGMLNIIKSCVQAKTVKKFIFTTSGGTVNVEEHQKP--VYDETDSSDMDFINSKK 169          
BLAST of DN617710 vs. ExPASy Swiss-Prot
Match: DFRA_MEDSA (Dihydroflavonol-4-reductase (Fragment) OS=Medicago sativa GN=DFR1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  102 SWMVKLLLEKGYNVKGTVRNPDDPKNAH-LRELEGAKERLVLCKADLLDYESLKEAINGCEGVFHTASPV---TDDPE-QMVEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNTK 506
            SW+V  L+E GY V+ TVR+P++ K    L EL GAK +L + KADL +  S  EAI GC GVFH A+P+   + DPE +M++P + G  +               +TSS G + +  ++ P  + DESCWSD+EFC+  K
Sbjct:    2 SWLVMRLMEPGYMVRATVRDPENLKKVSPLLELPGAKSKLSIWKADLGEEGSFDEAIKGCTGVFHVATPMDFESKDPENEMIKPTIKGVLDIMKACLKAKTVRRLIYTSSAGTLNVTEDQKP--LWDESCWSDVEFCRRVK 140          
BLAST of DN617710 vs. ExPASy Swiss-Prot
Match: BAN_ARATH (Leucoanthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 58/163 (35.58%), Postives = 91/163 (55.83%), Query Frame = 3
Query:   48 SQVSGQSICVTGAGGFIASWMVKLLLEKGYNVKGTVRNPDDPKN-AHLRELEGAKERLVLCKADLLDYESLKEAINGCEGVFHTASPV---TDDPEQ-MVEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGAVYMDPNRSPDDVVDESCWSDLEFCKNTK--NW 512
            +    +  CV G  G +AS ++K LL+ GY V  TVR+P++ K  AHLR+L+   + L + KADL D +S + + +GCE +FH A+P+   ++DPE+ M++PA+ G  N               +TSS  AV ++       V++E  W+D+EF    K  NW
Sbjct:    6 THTGSKKACVIGGTGNLASILIKHLLQSGYKVNTTVRDPENEKKIAHLRKLQELGD-LKIFKADLTDEDSFESSFSGCEYIFHVATPINFKSEDPEKDMIKPAIQGVINVLKSCLKSKSVKRVIYTSSAAAVSINNLSGTGIVMNEENWTDVEFLTEEKPFNW 167          
The following BLAST results are available for this feature:
BLAST of DN617710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DFRA_GERHY3.875e-2243.59Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=... [more]
DFRA_ANTMA2.512e-2139.88Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]
DFRA_MEDSA3.627e-2041.13Dihydroflavonol-4-reductase (Fragment) OS=Medicago... [more]
BAN_ARATH3.395e-1835.58Leucoanthocyanidin reductase OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01J10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617710 ID=DN617710; Name=DN617710; organism=Citrus sinensis; type=EST; length=629bp
ACAAAGCATTACAATTTACCTTCACCATGACGGTAATTGATAGCAGCTCC
CAAGTTTCTGGCCAATCTATTTGTGTCACAGGCGCCGGTGGCTTCATCGC
TTCTTGGATGGTCAAACTTCTCCTTGAAAAAGGTTACAATGTTAAAGGCA
CCGTCAGGAACCCAGATGATCCAAAGAATGCTCATTTGAGGGAGCTTGAA
GGAGCAAAAGAAAGATTAGTTTTATGCAAAGCTGATCTTCTTGATTATGA
GAGTCTCAAAGAGGCCATTAATGGATGTGAGGGAGTTTTTCATACTGCTT
CCCCTGTGACAGATGATCCAGAACAAATGGTGGAGCCCGCGGTGATCGGA
ACCAAGAACGTGATTGTTGCGGCGGCTGAGGCCAAGGTCCGGCGTGTCGT
GTTCACGTCGTCGATCGGTGCAGTTTACATGGACCCCAACCGGAGCCCTG
ATGATGTTGTTGATGAATCTTGCTGGAGTGATCTTGAGTTTTGCAAAAAC
ACCAAGAACTGGTATTGCTACGGAAAAGCCGTGGCGGAGAAGGCGGCGTG
GGAGGAGGCGGTGGCAAGAGGGGTGGACCTGGTGGTGGTGAACCCAGTGT
TGGTGCTAGGGCCATTGTTGCAATCAACT
back to top