DN617707

Overview
NameDN617707
Unique NameDN617707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.970e-57
Identity = 97/143 (67.83%), Postives = 112/143 (78.32%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GGGW++ HATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DPKWC  GS  I +TATNFCPPN A  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVP+SFRR+PC K+GGIRFT+NG
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTING 170          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.616e-57
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GG WQ+ HATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+E+KC NDPKWC PG  S+ VTATNFCPPNLA  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NG
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTING 173          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.601e-56
Identity = 96/143 (67.13%), Postives = 112/143 (78.32%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GG WQ+ HATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DP+WC+PG  SI+VTATNFCPPN A  +D+GGWCNPP +HFD+A P FL+I  YRAGIVP+S+RR+PC K GGIRFTVNG
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNG 175          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.248e-55
Identity = 99/149 (66.44%), Postives = 114/149 (76.51%), Query Frame = 2
Query:  131 GDYGGG-WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDP--KWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G YGGG WQS HATFY              YGNLYSQGYG N AALSTALFN+G SCG+C+E+KC N P  +WC PGS  I++TATNFCPPN AL +DNGGWCNPP  HFD+A P FL IA+YRAGIVP+S+RR+PC KKGG+RFT+NG
Sbjct:   29 GAYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTING 177          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.525e-53
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE---NDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GGGW S HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C+        CLPGS++VTATNFCPPN AL +D+GGWCNPP  HFDM++P F +IA ++AGIVP+S+RR+ C KKGGIRFT+NG
Sbjct:   61 GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTING 204          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.525e-53
Identity = 88/142 (61.97%), Postives = 108/142 (76.06%), Query Frame = 2
Query:  137 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            Y  GW +  ATFY              YGNLYSQGYGTNTAALSTALFN G SCG+C+++KC +DPKWC+ G+I VT TNFCPPN A +N+ GGWCNPP  HFD+A+P FL+IAQY+AG+VP+ +RR+ C +KGGIRFT+NG
Sbjct:   25 YSSGWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTING 166          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.398e-53
Identity = 96/143 (67.13%), Postives = 112/143 (78.32%), Query Frame = 2
Query:  143 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKW-CLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G WQ GHATFY              YGNLYSQGYGT+TAALSTALFN GLSCGSCYE++C  D +  CLPG  ++ VTATNFCPPN AL +D GGWCNPP +HFD+AEPAFL+IA++ AGIVP+SFRR+ CA+KGG+RFTVNG
Sbjct:   26 GQWQPGHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNG 168          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 3.291e-48
Identity = 87/139 (62.59%), Postives = 102/139 (73.38%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW SG ATFY              YGNLYS GYGT+TAALSTALFNNG SCG+C+E++C      CL G++ VTATN CPPN AL+ D GGWCNPP  HFDMAEPAF +IAQ RAG+VP+ +RR+ CAK+GGIRFT+ G
Sbjct:   26 GWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITG 163          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48
Identity = 84/152 (55.26%), Postives = 106/152 (69.74%), Query Frame = 2
Query:  122 GTFGDYGG-----GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G    +GG     GW  G ATFY              YG+L+ QGYG  TAALSTALFNNG  CG+CYE+ CE+ P+WCLPGSI +TATNFCPP+    NDN  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G
Sbjct:   76 GALPSHGGQVPHSGWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKG 225          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48
Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            WQ  HATFY              YGNLYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NG
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTING 179          
The following BLAST results are available for this feature:
BLAST of DN617707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXPA6_ARATH2.970e-5767.83Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP16_ARATH6.616e-5768.53Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA3_ARATH5.601e-5667.13Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ1.248e-5566.44Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ1.525e-5364.58Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ARATH1.525e-5361.97Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA6_ORYSJ3.398e-5367.13Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ3.291e-4862.59Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH7.331e-4855.26Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP23_ORYSJ7.331e-4858.87Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617707 ID=DN617707; Name=DN617707; organism=Citrus sinensis; type=EST; length=563bp
CTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGTAG
CAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGTTT
GTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTG
GCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAA
TGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACT
AACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGG
TTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCG
GCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTG
TCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACAT
GGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGTCC
CAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTT
ACCGTCAATGGAC
back to top