DN617707

Overview
NameDN617707
Unique NameDN617707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.251e-47
Identity = 85/142 (59.86%), Postives = 104/142 (73.24%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW   HATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY++ C+    P+WCL G SI +TATNFCPPN A ++DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTING 168          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.251e-47
Identity = 83/142 (58.45%), Postives = 106/142 (74.65%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW SG ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG CY++ C++  +P+WCL G ++ +T TN CPPN ALS+++GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGG 172          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.633e-47
Identity = 85/142 (59.86%), Postives = 103/142 (72.54%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW  G ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C+   DP+WC  G S+ VTATNFCPPN AL +D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G
Sbjct:   33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAG 174          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.633e-47
Identity = 83/142 (58.45%), Postives = 103/142 (72.54%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW   HATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C+   D  WC PG S+ +TATNFCPPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NG
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTING 174          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.633e-47
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G  +GHATFY              YG+LYS GYGT TAALSTALFN+G SCG CY + C++  D +WCL G S+++TATNFCPPN AL N+NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRING 166          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.639e-47
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W   HATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NG
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTING 192          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.639e-47
Identity = 82/141 (58.16%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            WQ  HATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NG
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTING 174          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.358e-46
Identity = 82/141 (58.16%), Postives = 101/141 (71.63%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W   HATFY              Y +LYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ VTATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NG
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTING 190          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.254e-46
Identity = 83/142 (58.45%), Postives = 101/142 (71.13%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW    ATFY              YG+LYS GYGTNTAALST LFN+G SCG CY + C+   D ++C+ G S+ +TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTING 174          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.909e-45
Identity = 83/140 (59.29%), Postives = 98/140 (70.00%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN-DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W    ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ + C+    +WC PG SI VTATNFCPPN ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNG
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNG 164          
The following BLAST results are available for this feature:
BLAST of DN617707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP17_ARATH1.251e-4759.86Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP15_ORYSJ1.251e-4758.45Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ1.633e-4759.86Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ1.633e-4758.45Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.633e-4759.86Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP22_ORYSJ3.639e-4758.16Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ3.639e-4758.16Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ2.358e-4658.16Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ5.254e-4658.45Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ORYSJ9.909e-4559.29Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617707 ID=DN617707; Name=DN617707; organism=Citrus sinensis; type=EST; length=563bp
CTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGTAG
CAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGTTT
GTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTG
GCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAA
TGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACT
AACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGG
TTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCG
GCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTG
TCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACAT
GGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGTCC
CAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTT
ACCGTCAATGGAC
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