DN617707

Overview
NameDN617707
Unique NameDN617707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.096e-43
Identity = 79/148 (53.38%), Postives = 103/148 (69.59%), Query Frame = 2
Query:  143 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN----DPKWCLPG----SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G W   HATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C      D + CLP     SI+VTAT+ CP N AL  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NG
Sbjct:   28 GRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTING 175          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.096e-43
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 2
Query:  155 SGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            SG ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY++ C+ ++ KWC  G S+ +TATN CPP+ +  +++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTING 163          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.431e-43
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W    ATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY++ C NDP+WCLPGS+ +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPD--YSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKG 183          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.869e-43
Identity = 80/153 (52.29%), Postives = 101/153 (66.01%), Query Frame = 2
Query:  113 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            C         GGW SG ATFY              YGNLY+QGYG   AALSTALFN G SCG CY + C+    P+WC  G+ + +TATN CPPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G
Sbjct:   15 CITSASAAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSG 167          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.274e-43
Identity = 78/145 (53.79%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  131 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G + G W + HATFY              YGNLYSQGYG  TAALSTALF+ GLSCG+C+E+ C NDP+WC+ G SI+VTATNFCPP        GG C+PP  HFD+++P + +IA Y++GI+P+ +RR+ C + GGIRFT+NG
Sbjct:   32 GGHMGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTING 168          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 9.274e-43
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W    ATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY++ C +DP+WCLPG+I +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPD--YSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKG 190          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.582e-42
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  146 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GW  G ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY + C+    P+WC  G+ + +TATN CPPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGG 167          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.066e-42
Identity = 77/140 (55.00%), Postives = 96/140 (68.57%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPK-WCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W    ATFY              YGNLY+ GYG N AALS+ALFN+G  CG+CY + C+     WC PG SI +TATN CPPN A  +D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+R+PC K GGIRFT++G
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISG 162          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.066e-42
Identity = 77/142 (54.23%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  143 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G W+  HATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KC + P  C  G+  ++VTATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G
Sbjct:   40 GPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITG 181          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.066e-42
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W    ATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKG 193          
The following BLAST results are available for this feature:
BLAST of DN617707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP21_ORYSJ1.096e-4353.38Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.096e-4356.52Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH1.431e-4354.35Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP28_ORYSJ1.869e-4352.29Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH9.274e-4353.79Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP25_ARATH9.274e-4353.62Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP25_ORYSJ1.582e-4254.23Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ2.066e-4255.00Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ2.066e-4254.23Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH2.066e-4253.62Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617707 ID=DN617707; Name=DN617707; organism=Citrus sinensis; type=EST; length=563bp
CTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGTAG
CAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGTTT
GTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTG
GCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAA
TGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACT
AACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGG
TTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCG
GCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTG
TCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACAT
GGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGTCC
CAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTT
ACCGTCAATGGAC
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