DN617707

Overview
NameDN617707
Unique NameDN617707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.586e-34
Identity = 71/141 (50.35%), Postives = 87/141 (61.70%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W  G ATFY              YGNLY QGYG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+CPPN  L    GGWCN    HFDM++PA+  I  Y AGI+PI ++++ C + GG+RFT+NG
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTING 161          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.705e-34
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  131 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNG 562
            G    GW   HAT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C+   DPKWCL G ++ VTATNFCP     +N+N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G
Sbjct:   21 GMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCP-----TNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRG 163          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  104 LNFCFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            L+ C R   G Y   W+ G AT+                 YG+L    YG  TA +S ALF  G +CG CYE++C N   WCL GS  ++VTAT+FC PNL LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G
Sbjct:   18 LSGCIRLGNGGYEE-WRMGSATYIKESLGHPLNDGGGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITG 173          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.662e-33
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W+   AT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++C +D +WC+PG SII+TATNFC PN     D GG CNPP +HF +   AF +IA ++AG +P+ +RRI C K+G +RFTV+G
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDG 178          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32
Identity = 67/139 (48.20%), Postives = 88/139 (63.31%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W+S  A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KC +D K+CLPG SI+VTATNFC PN  L  D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAG 170          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 5.640e-32
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  218 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            YG+L   GYG  TAALSTALFN+G SCG+CYE+ C  +P+ CL GSI +TAT+ CPP  A       WC  P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G
Sbjct:   69 YGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKG 176          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.235e-31
Identity = 57/117 (48.72%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  218 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            YG+L    +   +A LS  LFN G SCG+C E++C N  +WCL GS  ++VTAT+FCPPN  LS+D GGWCN P +H +++  AF  IA+ RA ++PI +RR+ C ++GG+RF+++G
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSG 169          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.941e-28
Identity = 64/141 (45.39%), Postives = 80/141 (56.74%), Query Frame = 2
Query:  149 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            W  G ATFY              YGNLY Q YG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+           GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C + GG+RF +NG
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIING 152          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.392e-22
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  143 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G W  GHATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K ++        +++VTATN  PP +   N   G      +HFD+  PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPV---NGMKG------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITG 203          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 46/148 (31.08%), Postives = 66/148 (44.59%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVN 559
            G GW SG AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY++KC  + + C    + V  T+ CP         GG C     HFDM+  AF  +A          AG++ I ++R+PC     + F V+
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVD 179          
The following BLAST results are available for this feature:
BLAST of DN617707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP19_ORYSJ1.586e-3450.35Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH2.705e-3447.30Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP16_ORYSJ4.614e-3446.50Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH6.662e-3346.04Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ1.136e-3248.20Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH5.640e-3253.91Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ARATH6.235e-3148.72Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP20_ORYSJ4.941e-2845.39Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.392e-2240.00Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ1.106e-1131.08Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617707 ID=DN617707; Name=DN617707; organism=Citrus sinensis; type=EST; length=563bp
CTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGTAG
CAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGTTT
GTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTG
GCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAA
TGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACT
AACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGG
TTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCG
GCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTG
TCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACAT
GGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGTCC
CAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTT
ACCGTCAATGGAC
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