DN617706

Overview
NameDN617706
Unique NameDN617706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:46..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.352e-36
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RR+ CAK+GGIRFT+ GHSYF LVL+TNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF++TASDGRTVTS+NV P  W
Sbjct:  146 YRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.917e-35
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RR+PC K+GGIRFT+NGH YF LVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF++T SD RT TS N+VP NW
Sbjct:  152 SYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.303e-34
Identity = 61/92 (66.30%), Postives = 79/92 (85.87%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+PCAK+GG+RFT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF++T+SDG+T+T  +V P  W
Sbjct:  157 YQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RRIPC KKGGIRFT+NG  YF LVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF++  SDGR+ TSNN+ P NW
Sbjct:  153 SYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 64/99 (64.65%), Postives = 82/99 (82.83%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            SFRR+ CA+KGG+RFTVNGH+YF LVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF++TA DGR++T  +V P  W
Sbjct:  150 SFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.929e-34
Identity = 63/94 (67.02%), Postives = 79/94 (84.04%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RR+ C KKGGIRFT+NGHSYF LVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF++T  DGR+V SNN VP  W
Sbjct:  186 SYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RR+ C K GGIRFT+NGH YF LVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF++T+SD RT TS N+ P NW
Sbjct:  155 SYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.326e-33
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RR+PC K GGIRFTVNG  YF LVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF++TASD R+ TS NV P  W
Sbjct:  157 SYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.264e-32
Identity = 62/93 (66.67%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RR+PC KKGG+RFT+NG  YF LVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF++T SD RT TS N  P  W
Sbjct:  159 SYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.803e-32
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            SFRR+PC K+GGIRFT+NG  YF LVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF++T+SD R+ TS N+ P NW
Sbjct:  152 SFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
The following BLAST results are available for this feature:
BLAST of DN617706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP11_ORYSJ9.352e-3670.65Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA4_ARATH7.917e-3568.82Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA1_ORYSJ2.303e-3466.30Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH3.008e-3469.89Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA6_ORYSJ3.008e-3464.65Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ3.929e-3467.02Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH5.131e-3467.74Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA3_ARATH3.326e-3369.89Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ1.264e-3266.67Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH4.803e-3264.52Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617706 ID=DN617706; Name=DN617706; organism=Citrus sinensis; type=EST; length=593bp
TTTATCAATAAACTTTTAACTGATGTCTCAAATGATAACCAGAAATCACA
ACGCTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATA
TAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACC
ACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACC
CCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATA
TACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGATCAAAACCAGGGTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGA
back to top