DN617706

Overview
NameDN617706
Unique NameDN617706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:46..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.070e-31
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            ++RR+PC + GGIRF VNGHSYF LVL+TNVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF++ A DGR VT+ +V P  W
Sbjct:  146 NYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.070e-31
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+RR+ C +KGG+RFT+NGHSYF LVL++NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS + L+GQ+LSF +T  D R+V S NV P  W
Sbjct:  157 SYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.397e-31
Identity = 56/93 (60.22%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            +F+R+ C +KGG+RFT+NG+SYF LVLITNVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF +T++ G+T+   +V P NW
Sbjct:  145 NFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.397e-31
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            F+R+ C KKGG+RF +NG  YF LV I NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP +W
Sbjct:  149 FQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            +++R+PC + GGIRF ++GH YF LV +TNVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSLSF +   DGR VT+ NV P NW
Sbjct:  150 NYKRVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            +F+R+PC K GGIRFT++G  YF LV + NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YLN QSLSF++   D R VT  N+ P NW
Sbjct:  144 NFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            +FRR+PC ++GG+RFTV G  YF LVL+TNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF++TA+DG+T+    VVP +W
Sbjct:  156 AFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RR+ C + GG+RF V G S+F  VLI+NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF+LT+SDG+T+T+ NVVP  W
Sbjct:  153 YRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            + R PC + GGIRF + GH Y+ LVL+TNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF++ A DG  VT+ +V P NW
Sbjct:  149 YARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+PC KKGG+RFT+NGH YF LVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF++T  DG+T+   N+VP  W
Sbjct:  157 YQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
The following BLAST results are available for this feature:
BLAST of DN617706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA8_ORYSJ1.070e-3164.52Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ1.070e-3162.50Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.397e-3160.22Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.397e-3166.30Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA3_ORYSJ1.825e-3163.44Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ4.066e-3164.52Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ1.446e-2857.89Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ5.495e-2859.78Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ6.076e-2756.52Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ORYSJ6.076e-2755.91Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617706 ID=DN617706; Name=DN617706; organism=Citrus sinensis; type=EST; length=593bp
TTTATCAATAAACTTTTAACTGATGTCTCAAATGATAACCAGAAATCACA
ACGCTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATA
TAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACC
ACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACC
CCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATA
TACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGATCAAAACCAGGGTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGA
back to top