DN617706

Overview
NameDN617706
Unique NameDN617706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+PC KKGG+RFT+NGH YF LVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  173 YQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++++ C + GG+RFT+NG +YF LVLI+NV G G++  V IKGSK+  W+ MSRNWG N+QSN+YLNGQSLSF++  SDG    + NVVP NW
Sbjct:  151 YKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSNW 243          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF++T SDG T    NV+P NW
Sbjct:  170 YRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+PC KKGG+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF++T +DG+T+   NVV   W
Sbjct:  157 YQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RRI C K+G +RFTV+G   F  VLITNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF++T+SD  TVTS NV P NW
Sbjct:  161 YRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.309e-26
Identity = 51/92 (55.43%), Postives = 74/92 (80.43%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++++ C ++GG+RFTV+G +YF LVLITNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L GQ+LSF++T++ G+T+  N+VVP  W
Sbjct:  150 YQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+PC KKGG+RFT+NGH YF LVL+TNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF++T +D +T+   NVVP  W
Sbjct:  162 YQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+PC KKGG+RFT+NGH YF LVL+TNV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  175 YQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RRIPC+K GG++F   G+ YF +VLI NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF++T +DG T    NV+P NW
Sbjct:  176 YRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.553e-25
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RRI CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF++T SDG T   NNV+P NW
Sbjct:  173 YRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
The following BLAST results are available for this feature:
BLAST of DN617706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP24_ORYSJ7.935e-2755.91Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.036e-2656.99Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH1.354e-2656.52Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP13_ORYSJ1.354e-2654.84Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.354e-2659.78Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP28_ORYSJ2.309e-2655.43Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ5.143e-2653.76Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ5.143e-2654.84Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH8.773e-2654.35Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP25_ARATH2.553e-2552.17Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617706 ID=DN617706; Name=DN617706; organism=Citrus sinensis; type=EST; length=593bp
TTTATCAATAAACTTTTAACTGATGTCTCAAATGATAACCAGAAATCACA
ACGCTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATA
TAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACC
ACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACC
CCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATA
TACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGATCAAAACCAGGGTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGA
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