DN617706

Overview
NameDN617706
Unique NameDN617706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.075e-23
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++++ C + GG+RF +NG +YF LVL+TN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF +T++ G+T+  ++ VP  W
Sbjct:  135 YQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.186e-22
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RR+ C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  150 YRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.642e-22
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            ++R+ C ++GG+RFTV G +YF LVLITNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF +T + G+ +   +V P  W
Sbjct:  151 YQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.885e-22
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            +RR+ C ++GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF++T   G+T+ S +V P  W
Sbjct:  152 YRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-22
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 590
            FRR+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  208 FRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.814e-21
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGR-TVTSNNVVPGNW 593
            S+RR+ C K GGIRF   G+ Y+ LV + NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF+LT+   R T+ + N  P +W
Sbjct:  151 SYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.953e-19
Identity = 38/94 (40.43%), Postives = 65/94 (69.15%), Query Frame = -1
Query:  315 SFRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 593
            S+R++ C ++GGI++T+ G+  + +V++ NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F++   D R  TS  V P +W
Sbjct:  185 SYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.155e-18
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 590
            +RR+PCA+ GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+ + L GQ+LSF++T+ + G+T+ +  V P +W
Sbjct:  160 YRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
BLAST of DN617706 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = -1
Query:  315 FRRIPCAKKGGIRFTVNGHSYFTLVLITNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYL-NGQSLSFQLT--ASDGRTVTSNNVVPGNW 590
            +RR+PC + GG+RF + G+ Y+ L+ + NVGGAGDV S+S+K S  G  W   + NWG  +Q  + L N   L+ +LT  ++  +T+  ++ +   W
Sbjct:  175 YRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWW 271          
The following BLAST results are available for this feature:
BLAST of DN617706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP20_ORYSJ4.075e-2347.83Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.186e-2250.00Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP31_ORYSJ2.642e-2253.26Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH5.885e-2250.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP24_ARATH7.686e-2250.00Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP18_ARATH3.814e-2150.00Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP26_ORYSJ7.953e-1940.43Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ5.155e-1843.62Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ2.098e-1137.11Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617706 ID=DN617706; Name=DN617706; organism=Citrus sinensis; type=EST; length=593bp
TTTATCAATAAACTTTTAACTGATGTCTCAAATGATAACCAGAAATCACA
ACGCTGAATGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATA
TAGAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACC
ACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACC
CCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATA
TACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAG
GTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGT
CCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGAT
AAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCAT
CCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCC
GACATTTGTGATCAAAACCAGGGTGAAGTATGAGTGTCCATTGACGGTAA
ACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGA
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