DN617702

Overview
NameDN617702
Unique NameDN617702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10142 contig Csv1_Contig10142:345..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.576e-16
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = -1
Query:  219 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA-AYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD 566
            G++  R+D+   G  PPH+HPRASE+ + L+G L VGFV +   +  +  + L+ G+ FVFP+GLIHF +NI   ++A A S L+SQ PG   ++ + F + P    + L  A+ ++
Sbjct:   91 GLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDIN 204          
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  300 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 566
            G+S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K LN+GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   86 GVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSA---NKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  300 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 566
            GIS  R+D A  G  P H HP ASE+ +V +GT+  GFV SD   NT   + L KGD+ VFPQGL+HFQ N G+  A A+++  S  PG
Sbjct:   89 GISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPG 174          
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  270 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFG 566
            G+S  R D    G  P H HPR+SE+  V++G ++ GFV +   NN +   VL KGDVFVFP+GL+HF  + G   A A+S  NSQ PG V I + VFG
Sbjct:   89 GLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGE-VFG 183          
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.720e-15
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = -1
Query:  255 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSI 566
            GIS  R D A  G   PH HPRASE+  V  G++  GF  +      L  K L +GDVF+FP+GL+HF  N G   A  +S LNSQ PG V I   +F  +  +
Sbjct:   94 GISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDT---KGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEV 194          
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  300 ISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 563
            +S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K L++GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   87 VSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSA---NKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of DN617702 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = -1
Query:  300 GISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 566
            G++  R+D AP G  P H HP ASEI  V+EGT+   F++S    N +  K L  GDV VFPQGL+ FQ   GK  A     L  + PG
Sbjct:   89 GVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG 173          
The following BLAST results are available for this feature:
BLAST of DN617702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL11_ARATH2.576e-1638.46Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL33_ARATH3.365e-1648.31Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
ABP20_PRUPE3.365e-1649.44Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL34_ARATH4.395e-1647.47Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL111_ORYSJ3.720e-1543.27Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLP1_SINAL6.346e-1546.59Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_IPONI3.259e-1144.94Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617702 ID=DN617702; Name=DN617702; organism=Citrus sinensis; type=EST; length=566bp
CTAAATAAAAACAATAACAATTATGTTTATTACATGGCCACAGTCAGCCT
GGAGAGAGGTTCATGAGAGACCTCTTTTATTACATTAATTAAGATATGAT
AATCTGGAGATAAAGTAATACAGCCACTAGTGAAGAGGCCATTTATATTA
AAGCTCATTAATTCCTTCTCCTAATTGCCATTAATGAACTTATTTTGAAG
ATCTTTCACTATCTTTGGGTCCAACTGGAATGCCTTGCCAAGAAAATCGG
GATTGATTGAAGGATTGGCTCCAAAGACTGTGTCGGCTATGGTAACTTCA
CCCGGGAATTGGCTGTTTAGAGCAGAATAGGCAGCTGCATTTGTTTTTCC
AATGTTGAATTGGAAGTGAATCAAACCTTGTGGAAACACAAAAACATCTC
CCTTATTTAGAACTTTTGCGATGAGTGTGTTATTCAGTTGGTCTGATGTC
ACAAAACCGACATAAAGAGTTCCTTCCAGGACTAAGAAGATTTCGCTGGC
ACGGGGGTGAATGTGAGGTGGCCTTTGGCCATATGGTGCATAGTCAATAC
GGAATGCTGATATGCC
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