DN617697

Overview
NameDN617697
Unique NameDN617697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:259..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.278e-27
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ +CKELGITALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIPTDST
Sbjct:   63 KVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDST 142
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_NEUCR (40S ribosomal protein S14 OS=Neurospora crassa GN=rps-14 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.719e-27
Identity = 63/80 (78.75%), Postives = 66/80 (82.50%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIK+RA            AQSALRALARSGMKIGRIEDVTP P+DST
Sbjct:   60 KVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDST 139
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.858e-27
Identity = 62/80 (77.50%), Postives = 66/80 (82.50%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKE+GITALH+KLRA            AQSALRALARSGMKIGRIEDVTPIP+D T
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_DICDI (40S ribosomal protein S14 OS=Dictyostelium discoideum GN=rps14 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.846e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVK DRDESSPYAA +AAQDV+ RCKELG+TALHIKLRA            AQSALRALARSGM+IGRIEDVTPIPTDST
Sbjct:   62 KVKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDST 141
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_CAEEL (40S ribosomal protein S14 OS=Caenorhabditis elegans GN=rps-14 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.371e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCK+LGI ALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIP+D T
Sbjct:   62 KVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_AEDAE (40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14B_ANOGA (40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   62 KVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14A_ANOGA (40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   62 KVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_DROME (40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.161e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14A_DROYA (40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.161e-26
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140
The following BLAST results are available for this feature:
BLAST of DN617697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS14_CHLRE1.278e-2780.0040S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_NEUCR3.719e-2778.7540S ribosomal protein S14 OS=Neurospora crassa GN=... [more]
RS14_PODCA4.858e-2777.5040S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_DICDI1.846e-2676.2540S ribosomal protein S14 OS=Dictyostelium discoid... [more]
RS14_CAEEL5.371e-2676.2540S ribosomal protein S14 OS=Caenorhabditis elegan... [more]
RS14_AEDAE7.015e-2676.2540S ribosomal protein S14 OS=Aedes aegypti GN=RpS1... [more]
RS14B_ANOGA7.015e-2676.2540S ribosomal protein S14b OS=Anopheles gambiae GN... [more]
RS14A_ANOGA7.015e-2676.2540S ribosomal protein S14a OS=Anopheles gambiae GN... [more]
RS14_DROME9.161e-2676.2540S ribosomal protein S14 OS=Drosophila melanogast... [more]
RS14A_DROYA9.161e-2676.2540S ribosomal protein S14a OS=Drosophila yakuba GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617697 ID=DN617697; Name=DN617697; organism=Citrus sinensis; type=EST; length=484bp
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCAAAAAAA
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