DN617697

Overview
NameDN617697
Unique NameDN617697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:259..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_CANAL (40S ribosomal protein S14 OS=Candida albicans GN=RPS14 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIKLRA             QSALRALARSG++IGRIEDVTP+P+DST
Sbjct:   44 KVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKLRATGGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDST 123          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_BOMMO (40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.196e-25
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTP+P+DST
Sbjct:   61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPVPSDST 140          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_TRYBB (40S ribosomal protein S14 OS=Trypanosoma brucei brucei GN=RPS14 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.563e-25
Identity = 58/80 (72.50%), Postives = 64/80 (80.00%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAM+AAQDV  RCKE GI ALH+K+RA            AQ+ALRALAR+GMKIGRIEDVTP+PTDST
Sbjct:   54 KVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTKSPGPGAQAALRALARAGMKIGRIEDVTPVPTDST 133          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_SCHPO (40S ribosomal protein S14 OS=Schizosaccharomyces pombe GN=rps14a PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.563e-25
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVK DRDESSPYAAMLAAQD + +CKE+GITALHIK+RA            AQ+ALRALAR+GM+IGRIEDVTPIPTDST
Sbjct:   49 KVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDST 128          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_KLULA (40S ribosomal protein S14 OS=Kluyveromyces lactis GN=RPS14 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.547e-25
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIK+RA             Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:   47 KVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14B_YEAST (40S ribosomal protein S14-B OS=Saccharomyces cerevisiae GN=RPS14B PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA             Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:   48 KVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 127          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14A_YEAST (40S ribosomal protein S14-A OS=Saccharomyces cerevisiae GN=RPS14A PE=1 SV=5)

HSP 1 Score: 113.235 bits (282), Expect = 5.938e-25
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA             Q+ALRALARSG++IGRIEDVTP+P+DST
Sbjct:   47 KVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDST 126          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_TORRU (40S ribosomal protein S14 OS=Tortula ruralis GN=RPS14 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.755e-25
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDE+SPYAAMLAAQDV+ RCKELGITALHI +RA            AQS LRALARSGM+IGRIEDVTPIPTDST
Sbjct:   45 KVKADRDEASPYAAMLAAQDVAQRCKELGITALHINVRATGGNKTKTPGPGAQS-LRALARSGMRIGRIEDVTPIPTDST 123          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_PROCL (40S ribosomal protein S14 OS=Procambarus clarkii GN=RPS14 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ +CK LGI  LHIK+RA             QSALRALAR+GMKIGRIEDVTP+P+DST
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAEKCKSLGINCLHIKIRATGGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDST 140          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_THESM (30S ribosomal protein S11P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps11p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.031e-18
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VKADRDESSPYAAM+AA+  +    E GI  +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   50 VKADRDESSPYAAMIAARRAAEEAMEKGINGVHIKVRAPGGSKSKNPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
The following BLAST results are available for this feature:
BLAST of DN617697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS14_CANAL1.196e-2572.5040S ribosomal protein S14 OS=Candida albicans GN=R... [more]
RS14_BOMMO1.196e-2575.0040S ribosomal protein S14 OS=Bombyx mori GN=RpS14 ... [more]
RS14_TRYBB1.563e-2572.5040S ribosomal protein S14 OS=Trypanosoma brucei br... [more]
RS14_SCHPO1.563e-2572.5040S ribosomal protein S14 OS=Schizosaccharomyces p... [more]
RS14_KLULA4.547e-2570.0040S ribosomal protein S14 OS=Kluyveromyces lactis ... [more]
RS14B_YEAST5.938e-2568.7540S ribosomal protein S14-B OS=Saccharomyces cerev... [more]
RS14A_YEAST5.938e-2568.7540S ribosomal protein S14-A OS=Saccharomyces cerev... [more]
RS14_TORRU7.755e-2576.2540S ribosomal protein S14 OS=Tortula ruralis GN=RP... [more]
RS14_PROCL1.013e-2471.2540S ribosomal protein S14 OS=Procambarus clarkii G... [more]
RS11_THESM7.031e-1856.9630S ribosomal protein S11P OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617697 ID=DN617697; Name=DN617697; organism=Citrus sinensis; type=EST; length=484bp
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCAAAAAAA
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