DN617697

Overview
NameDN617697
Unique NameDN617697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_IGNH4 (30S ribosomal protein S11P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps11p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.595e-16
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            VKAD ++ SPYAAM+AA   + +  E GITA+HIK+RA            AQ+A+RALARSG  IGRIEDVTP+P D+
Sbjct:   41 VKADHEKPSPYAAMIAAARAAQQAMERGITAIHIKVRAPGGYGPKTPGPGAQAAIRALARSGFIIGRIEDVTPLPHDT 118          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_UNCMA (30S ribosomal protein S11P OS=Uncultured methanogenic archaeon RC-I GN=rps11p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.122e-15
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK DR+ESSPYAAM  A +V+ + K  GI  +HI++RA            AQ+A+R+LAR+G++IGRIEDVTPIP D T
Sbjct:   43 VKQDRNESSPYAAMQMAMNVAEQIKAKGIQGVHIRVRAPGGNHQRSPGPGAQAAIRSLARAGLRIGRIEDVTPIPHDGT 121          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METLZ (30S ribosomal protein S11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps11p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.466e-15
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            VK  R+ESSPYAAM  A +++   K+ GIT LHI++RA            AQ+A+RAL+R+GM+IGRIEDVTP+P DS
Sbjct:   42 VKQARNESSPYAAMQMAINIAQASKDKGITGLHIRVRAPGNGRQRSPGPGAQAAIRALSRAGMRIGRIEDVTPVPHDS 119          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_SULAC (30S ribosomal protein S11P OS=Sulfolobus acidocaldarius GN=rps11p PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTP+P D+
Sbjct:   43 VKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDT 120          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METS5 (30S ribosomal protein S11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            VKADR++ SPYAAMLAA   ++   + G+ A+HIK+RA            AQ A+R+LARSG  IGRIEDVTPIP D+
Sbjct:   43 VKADREKPSPYAAMLAANKAASDALDKGLMAIHIKVRAPGGAGPKTPGPGAQPAIRSLARSGFIIGRIEDVTPIPHDT 120          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METAC (30S ribosomal protein S11P OS=Methanosarcina acetivorans GN=rps11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VKA RDESSPY AM  A  ++ + K+ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:   40 VKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_META3 (30S ribosomal protein S11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps11p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.571e-15
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK  +DESSPYAAM  A  ++   +E GI  +HIK+RA            AQ+A+RALAR+G+KIGRIED TPIP D T
Sbjct:   39 VKNQKDESSPYAAMQGAFKIADMIREKGIDKVHIKVRATGGSKSKNPGPGAQAAIRALARAGIKIGRIEDATPIPHDGT 117          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.276e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            V+ADR ++SP+AAM AA  ++   KE G   LHI++RA            AQ+ +RALAR+G+KIG+IED+TPIP D T
Sbjct:   41 VRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPHDGT 119          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_HALWD (30S ribosomal protein S11P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps11p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.502e-15
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK +RDE+SPYAAM  A+ V+   K  GI  LH+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:   45 VKQNRDEASPYAAMQMAESVAEDIKAAGIDGLHVRVRGPGGNGNKSPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 123          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METMA (30S ribosomal protein S11P OS=Methanosarcina mazei GN=rps11p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.241e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:   40 VKAARDESSPYTAMQMAGQLADQLRDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
The following BLAST results are available for this feature:
BLAST of DN617697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_IGNH48.595e-1655.1330S ribosomal protein S11P OS=Ignicoccus hospitali... [more]
RS11_UNCMA1.122e-1553.1630S ribosomal protein S11P OS=Uncultured methanoge... [more]
RS11_METLZ1.466e-1553.8530S ribosomal protein S11P OS=Methanocorpusculum l... [more]
RS11_SULAC5.571e-1553.8530S ribosomal protein S11P OS=Sulfolobus acidocald... [more]
RS11_METS55.571e-1553.8530S ribosomal protein S11P OS=Metallosphaera sedul... [more]
RS11_METAC5.571e-1550.6330S ribosomal protein S11P OS=Methanosarcina aceti... [more]
RS11_META35.571e-1553.1630S ribosomal protein S11P OS=Methanococcus aeolic... [more]
RS11_METS37.276e-1549.3730S ribosomal protein S11P OS=Methanobrevibacter s... [more]
RS11_HALWD9.502e-1550.6330S ribosomal protein S11P OS=Haloquadratum walsby... [more]
RS11_METMA1.241e-1449.3730S ribosomal protein S11P OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617697 ID=DN617697; Name=DN617697; organism=Citrus sinensis; type=EST; length=484bp
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCAAAAAAA
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