DN617697

Overview
NameDN617697
Unique NameDN617697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METVS (30S ribosomal protein S11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps11p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G+KIGRIED TPIP D T
Sbjct:   39 VRNQRDESSPYAAMQAAFKIAELMRDKGIDQVHVKVRAAGGQKSKNPGPGAQAAIRALSRAGIKIGRIEDATPIPHDGT 117          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METJA (30S ribosomal protein S11P OS=Methanocaldococcus jannaschii GN=rps11p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.621e-14
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:   18 RDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            RDE SPYAAM AA  ++   KE GI  +HIK+RA            AQ+A+RALAR+G++IGRIEDVTP+P D T
Sbjct:   47 RDEGSPYAAMQAAFKLAEVLKERGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_NATPD (30S ribosomal protein S11P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps11p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK +RDE+SPYAAM  A+ V+   K+ GI  +H+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:   41 VKQNRDEASPYAAMQMAEVVAEDVKDAGIDGVHVRVRGPGGNQQQNPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:   40 VKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGT 118          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_TOBAC (40S ribosomal protein S14 (Fragment) OS=Nicotiana tabacum GN=RPS14 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.765e-14
Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   78 KELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KELGI ALHIKLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 KELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 55          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_THEAC (30S ribosomal protein S11P OS=Thermoplasma acidophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   41 VKNDRDQASPYAAMKAADMVSEALKEKEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 119          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_PICTO (30S ribosomal protein S11P OS=Picrophilus torridus GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK DRDE+SPYAAM AA  VS + +E  IT L I++RA            AQSA+RAL+R+G KI RIE+VTPIP D T
Sbjct:   38 VKNDRDEASPYAAMRAADMVSEKLREREITDLIIRVRAPGGSKSKIPGPGAQSAIRALSRAGFKILRIEEVTPIPHDGT 116          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METMP (30S ribosomal protein S11P OS=Methanococcus maripaludis GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:   39 VRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METM7 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:   39 VRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METM5 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:   39 VRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
The following BLAST results are available for this feature:
BLAST of DN617697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_METVS1.621e-1450.6330S ribosomal protein S11P OS=Methanococcus vannie... [more]
RS11_METJA1.621e-1454.6730S ribosomal protein S11P OS=Methanocaldococcus j... [more]
RS11_NATPD2.117e-1449.3730S ribosomal protein S11P OS=Natronomonas pharaon... [more]
RS11_METBF2.117e-1449.3730S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS14_TOBAC2.765e-1476.3640S ribosomal protein S14 (Fragment) OS=Nicotiana ... [more]
RS11_THEAC3.611e-1455.7030S ribosomal protein S11P OS=Thermoplasma acidoph... [more]
RS11_PICTO3.611e-1455.7030S ribosomal protein S11P OS=Picrophilus torridus... [more]
RS11_METMP3.611e-1449.3730S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METM73.611e-1449.3730S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METM53.611e-1449.3730S ribosomal protein S11P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617697 ID=DN617697; Name=DN617697; organism=Citrus sinensis; type=EST; length=484bp
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCAAAAAAA
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