DN617697

Overview
NameDN617697
Unique NameDN617697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA            AQ+A+RA AR+G++IGRIEDVTP+P D T
Sbjct:   40 VKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGT 118          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_CENSY (30S ribosomal protein S11P OS=Cenarchaeum symbiosum GN=rps11p PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            V ADR ESSP+AAM AA  V    +  G T  HI++RA            AQ+A+RALAR G +IGRI+DVTPIP D+T
Sbjct:  109 VNADRYESSPFAAMKAANKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHDTT 187          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.611e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            VKADRD+ SPYAAM+AA   +      GI A+H+K+R             A +A+RALAR+GM IGRIEDVTPIP D+
Sbjct:   43 VKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDT 120          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:   43 VKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 121          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK +RDE+SPYAAM  A+ ++    + GI  +H+++R             AQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:   41 VKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.810e-13
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   52 VRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDT 129          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.810e-13
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 236
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   49 VRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 239
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   50 VRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 236
            V+AD+D+ SP+AAM AA   +      GI A+HIK+R             A +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   44 VRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120          
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.588e-12
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    6 VKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            VK +RDE+SPYAAM  A+ V+ +  + G+  + +++R             AQ+ +RALAR+G++IGRIEDVTP P D T
Sbjct:   43 VKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGT 121          
The following BLAST results are available for this feature:
BLAST of DN617697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS11_METBU3.611e-1449.3730S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_CENSY3.611e-1451.9030S ribosomal protein S11P OS=Cenarchaeum symbiosu... [more]
RS11_CALMQ3.611e-1452.5630S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_THEVO4.716e-1455.7030S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_HALSA4.716e-1448.1030S ribosomal protein S11P OS=Halobacterium salina... [more]
RS11_PYRCJ6.810e-1350.0030S ribosomal protein S11P OS=Pyrobaculum calidifo... [more]
RS11_PYRAR6.810e-1350.6530S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]
RS11_PYRIL8.894e-1350.0030S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_PYRAE8.894e-1350.6530S ribosomal protein S11P OS=Pyrobaculum aerophil... [more]
RS11_HALMA2.588e-1244.3030S ribosomal protein S11P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617697 ID=DN617697; Name=DN617697; organism=Citrus sinensis; type=EST; length=484bp
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCAAAAAAA
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