DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:256..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.016e-27
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ +CKELGITALHIKLRA           GAQSALRALAR+GMKIGRIEDVTPIPTDST
Sbjct:   62 MKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDST 142
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_NEUCR (40S ribosomal protein S14 OS=Neurospora crassa GN=rps-14 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.734e-27
Identity = 64/81 (79.01%), Postives = 68/81 (83.95%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIK+RA           GAQSALRALARSGMKIGRIEDVTP P+DST
Sbjct:   59 IKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDST 139
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.862e-27
Identity = 63/81 (77.78%), Postives = 68/81 (83.95%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKE+GITALH+KLRA           GAQSALRALARSGMKIGRIEDVTPIP+D T
Sbjct:   60 MKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_DICDI (40S ribosomal protein S14 OS=Dictyostelium discoideum GN=rps14 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVK DRDESSPYAA +AAQDV+ RCKELG+TALHIKLRA           GAQSALRALARSGM+IGRIEDVTPIPTDST
Sbjct:   61 MKVKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDST 141
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_CAEEL (40S ribosomal protein S14 OS=Caenorhabditis elegans GN=rps-14 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.270e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCK+LGI ALHIKLRA           GAQSALRALAR+GMKIGRIEDVTPIP+D T
Sbjct:   61 MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_AEDAE (40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA           GAQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14B_ANOGA (40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA           GAQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   61 MKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14A_ANOGA (40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 5.577e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA           GAQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   61 MKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 141
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_DROME (40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA           GAQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14A_DROYA (40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.284e-26
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDE+SPYAAMLAAQDV+ +CK LGITALHIKLRA           GAQSALRALARS MKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDST 140
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS14_CHLRE1.016e-2780.2540S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_NEUCR1.734e-2779.0140S ribosomal protein S14 OS=Neurospora crassa GN=... [more]
RS14_PODCA3.862e-2777.7840S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_DICDI1.468e-2676.5440S ribosomal protein S14 OS=Dictyostelium discoid... [more]
RS14_CAEEL4.270e-2676.5440S ribosomal protein S14 OS=Caenorhabditis elegan... [more]
RS14_AEDAE5.577e-2676.5440S ribosomal protein S14 OS=Aedes aegypti GN=RpS1... [more]
RS14B_ANOGA5.577e-2676.5440S ribosomal protein S14b OS=Anopheles gambiae GN... [more]
RS14A_ANOGA5.577e-2676.5440S ribosomal protein S14a OS=Anopheles gambiae GN... [more]
RS14_DROME7.284e-2676.5440S ribosomal protein S14 OS=Drosophila melanogast... [more]
RS14A_DROYA7.284e-2676.5440S ribosomal protein S14a OS=Drosophila yakuba GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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